Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0424 ATGAAGAGAGATCACAAACACAGCCGATCTGAAAATGGCACCTACGGCGGCGCCGTGAAACCCGAAATCCCATCCCCTTCAAGTACTAAATCATCCAAGATGTGGCAAGACGACGACGAAATAAATCATCAACAACACGACGCCGGCGGCGGGGAAGATGAGCATCTCGCCGTTTTGGGTTACAATGTCCGGGCGTCGGAAATGGCTGACGTGGCTCAGAAACTGGAACAGCTGGAGATGGTCATGGTTTCTTCAGAAGAAGAGGGAATTTCTCACCTTTCTTCCAACACCGTCCATTACAATCCCTCCGATCTCTCCGCTTGGGTTCAAAGCATGCTTTCAGAGCTCAATAGCCCCCTTCAATCCCAACAACGAATCGATGACCCAATTCTCGCTATTCAAGAATCCAATTCCGTCGTTTTTAAAGACGATTCCGAATACGATCTCAGAGCAATCCCCGGCGTCGCCGCTTACCCTCCGAGTCCGACTCCGAGTCCCAAGAAACGTTTGAAGAAATCAGTTTCAGACCCGGCAACCGTGTCGGGTTCTTCCGAACCGTCACGGTCGGTTGTTTTAGTTGATTCACAAGACACCGGTGTACGGCTGGTCCACACACTCCTCGCTTGCGCAGAGGCCGTACAACAAAACAACCTCGAACTCGCCGATGCTTTGTTGAAACACATCGGTCTTCTGGCGGCGTCTCAGGCCGGTGCTATGCGGAAAGTCGCGACGTATTTCGCCGAAGCTTTAGCTCGCCGGATTTACCGAATCCACCCCCGAGATTGCTTGGATTCTTCCTACACCGATCTTCTCCAAATGCATTTTTACGAATCTTGCCCTTACCTCAAATTCGCTCATTTCACGGCGAATCAAGCTATCCTAGAAGCTTTCTCCACCGCTTCTCAGGTTCACGTTATTGATTTCAGTCTTCAACAGGGTCTTCAATGGCCGGCCTTGATTCAAGCTCTCGCTTTGCGCCCTGGCGGCCCACCGTTGTTTCGGTTAACGGGCATCGGCCCGCCGCAGCCGCTCGACGATACCGATGCTTTACAGCAAGTGGGATGGAAGTTGGCTCAATTGGCTGACGCCATTGGCGTTAAGTTTGAATTTCGTGGTTTTTTCTGCAATAGTCTTGCTGATCTTGAACCGGAGATGCTCGATTTACGCCCCGCCGACGTCGAGACCGTGGCGGTAAACTCCGTCTTCGAGCTCCATCAGTTACTAGCTCGCCCCGGAGCTATAGAGAAGGTCTTGTATTCAATCAAAGCTTTGAACCCCAAGATCGTCACCGTCGTTGAACAGGTAGCGAATCACAACGGCCCGGTTTTTCTGGACCGGTTTACGGAAGCCTTACATTACTATTCGAGTTTATTCGACTCTTTGGAAGGGTCGGCTCCTTCGACCGGGTTAACGACACCGAGTCAGGATGTGGTTATGTCTGAGGTTTATTTAGCGAGGCAGATTTGCAATGTCGTGGCTTGTGAAGGACCGGACCGGGTCGAGCGACACGAGACATTGGATCAGTGGCGGGATCGGTTTGGTTCGGCCGGGTTCGACTTGGTTCATCTTGGGTCTAATGCGTTTAAACAAGCTAGTACTTTACTAGCTCTATTCGCCGGCGGCGATGGGTATAGGGTTGAAGAGAGTAATGGTTGTTTAATGCTTGGTTGGCATACTCGGCCGCTTATCGCTACCTCGACTTGGTCGGTCTCATCGGACTCCTCGGATAATTCGGTTATAATCGCCTGA 1749 51.4 MKRDHKHSRSENGTYGGAVKPEIPSPSSTKSSKMWQDDDEINHQQHDAGGGEDEHLAVLGYNVRASEMADVAQKLEQLEMVMVSSEEEGISHLSSNTVHYNPSDLSAWVQSMLSELNSPLQSQQRIDDPILAIQESNSVVFKDDSEYDLRAIPGVAAYPPSPTPSPKKRLKKSVSDPATVSGSSEPSRSVVLVDSQDTGVRLVHTLLACAEAVQQNNLELADALLKHIGLLAASQAGAMRKVATYFAEALARRIYRIHPRDCLDSSYTDLLQMHFYESCPYLKFAHFTANQAILEAFSTASQVHVIDFSLQQGLQWPALIQALALRPGGPPLFRLTGIGPPQPLDDTDALQQVGWKLAQLADAIGVKFEFRGFFCNSLADLEPEMLDLRPADVETVAVNSVFELHQLLARPGAIEKVLYSIKALNPKIVTVVEQVANHNGPVFLDRFTEALHYYSSLFDSLEGSAPSTGLTTPSQDVVMSEVYLARQICNVVACEGPDRVERHETLDQWRDRFGSAGFDLVHLGSNAFKQASTLLALFAGGDGYRVEESNGCLMLGWHTRPLIATSTWSVSSDSSDNSVIIA 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2657757 2659505 - evm.model.ptg000007l.424 HCH9g0424 551056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0424 582 SMART DELLA_2 53 126 - -
HCH9g0424 582 MobiDBLite consensus disorder prediction 33 53 - -
HCH9g0424 582 MobiDBLite consensus disorder prediction 1 53 - -
HCH9g0424 582 ProSiteProfiles GRAS family profile. 193 569 IPR005202 -
HCH9g0424 582 Pfam Transcriptional regulator DELLA protein N terminal 53 119 IPR021914 -
HCH9g0424 582 MobiDBLite consensus disorder prediction 153 188 - -
HCH9g0424 582 Pfam GRAS domain family 202 568 IPR005202 -
HCH9g0424 582 Gene3D - 51 116 IPR038088 -
HCH9g0424 582 Coils Coil 68 88 - -
HCH9g0424 582 FunFam DELLA protein GAI 51 116 - -
HCH9g0424 582 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 175 568 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0424 K14494 - - mdm:103405830 803.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0857 HCH-Chr6:43379011 HCH9g0424 HCH-Chr9:2657757 1.30E-55 dispersed
HCH13g0958 HCH-Chr13:14118343 HCH9g0424 HCH-Chr9:2657757 2.70E-79 transposed
HCH5g1321 HCH-Chr5:50121650 HCH9g0424 HCH-Chr9:2657757 1.60E-43 transposed
HCH6g0928 HCH-Chr6:44058399 HCH9g0424 HCH-Chr9:2657757 1.30E-50 transposed
HCH6g0938 HCH-Chr6:44180497 HCH9g0424 HCH-Chr9:2657757 1.80E-56 transposed
HCH8g0794 HCH-Chr8:44538125 HCH9g0424 HCH-Chr9:2657757 7.80E-119 transposed
HCH8g1450 HCH-Chr8:48990978 HCH9g0424 HCH-Chr9:2657757 5.80E-58 transposed
HCH9g0872 HCH-Chr9:6250684 HCH9g0424 HCH-Chr9:2657757 7.10E-60 transposed
HCH10g1334 HCH-Chr10:45879793 HCH9g0424 HCH-Chr9:2657757 3.30E-176 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0186 . 77 755 GRAS Transcription Factor Family AT2G37650 53.9 3.9e-198 688.3
HCH4g1510 . 153 542 GRAS Transcription Factor Family AT3G13840 57.4 1.2e-124 443.7
HCH13g0493 . 284 737 GRAS Transcription Factor Family AT3G46600 50.7 1.1e-120 430.6
HCH14g0353 . 36 454 GRAS Transcription Factor Family AT3G49950 59.6 3.8e-137 485.0
HCH2g1073 . 123 776 GRAS Transcription Factor Family AT1G07530 50.9 4.1e-177 618.6
HCH6g1008 . 415 786 GRAS Transcription Factor Family AT3G60630 50.8 3.9e-93 339.3
HCH13g1280 . 95 567 GRAS Transcription Factor Family AT4G36710 52.4 6.3e-123 438.0
HCH6g0508 . 24 452 GRAS Transcription Factor Family AT5G41920 63.3 3.2e-144 508.4
HCH9g0872 . 392 769 GRAS Transcription Factor Family AT5G41920 57.0 6.2e-116 414.5
HCH5g0825 . 71 646 GRAS Transcription Factor Family AT5G52510 51.7 6.3e-131 464.9
HCH14g0562 . 1 589 GRAS Transcription Factor Family AT5G66770 56.9 1.6e-181 632.9
HCH2g0668 . 36 545 GRAS Transcription Factor Family AT1G50600 60.0 4.3e-170 594.7
HCH6g0857 . 108 541 GRAS Transcription Factor Family AT1G50600 64.2 1.9e-157 552.7
HCH14g0760 . 111 548 GRAS Transcription Factor Family AT1G50600 57.2 2.2e-142 502.7
HCH12g1143 . 210 580 GRAS Transcription Factor Family AT1G50600 62.8 1.7e-137 486.5
HCH12g1405 . 182 567 GRAS Transcription Factor Family AT1G50600 50.3 1.0e-110 397.5
HCH6g0938 . 1 660 GRAS Transcription Factor Family AT1G63100 53.6 2.1e-182 636.0
HCH9g0424 . 49 573 GRAS Transcription Factor Family AT1G14920 63.5 8.8e-187 650.2
HCH10g1334 . 35 548 GRAS Transcription Factor Family AT1G14920 65.3 2.2e-185 645.6
HCH6g0928 . 38 446 GRAS Transcription Factor Family AT1G55580 52.3 3.0e-111 399.1
HCH9g0424 . 1 571 GRAS Transcription Factor Family AT1G66350 62.4 1.4e-184 642.9
HCH10g1334 . 33 550 GRAS Transcription Factor Family AT1G66350 57.0 2.8e-158 555.4
HCH2g1073 . 245 776 GRAS Transcription Factor Family AT1G07520 50.9 1.3e-137 486.9
HCH2g0668 . 19 545 GRAS Transcription Factor Family AT5G48150 66.4 3.6e-195 677.9
HCH6g0857 . 96 541 GRAS Transcription Factor Family AT5G48150 64.5 7.1e-167 583.9
HCH14g0760 . 88 548 GRAS Transcription Factor Family AT5G48150 58.1 7.7e-153 537.3
HCH12g1143 . 118 580 GRAS Transcription Factor Family AT5G48150 55.4 4.7e-142 501.5
HCH12g1405 . 192 567 GRAS Transcription Factor Family AT5G48150 54.6 7.0e-122 434.5
HCH9g0424 . 52 572 GRAS Transcription Factor Family AT2G01570 63.1 2.8e-186 648.7
HCH10g1334 . 39 548 GRAS Transcription Factor Family AT2G01570 61.7 4.7e-181 631.3
HCH9g0424 . 1 571 GRAS Transcription Factor Family AT1G66350 62.4 1.4e-184 642.9
HCH10g1334 . 33 550 GRAS Transcription Factor Family AT1G66350 57.0 2.8e-158 555.4
HCH9g0424 . 52 571 GRAS Transcription Factor Family AT3G03450 64.4 6.3e-180 627.5
HCH10g1334 . 39 548 GRAS Transcription Factor Family AT3G03450 56.9 2.4e-155 545.8
HCH9g0424 . 49 573 GRAS Transcription Factor Family AT5G17490 61.3 3.0e-163 572.0
HCH10g1334 . 1 548 GRAS Transcription Factor Family AT5G17490 53.8 2.7e-148 522.3
HCH12g1405 . 1 567 GRAS Transcription Factor Family AT1G21450 58.8 5.2e-180 627.9
HCH12g1143 . 212 580 GRAS Transcription Factor Family AT1G21450 51.4 1.1e-108 391.0
HCH11g0186 . 370 754 GRAS Transcription Factor Family AT5G59450 52.6 2.0e-118 423.3
HCH14g0760 . 1 548 GRAS Transcription Factor Family AT4G17230 60.1 1.5e-183 639.4
HCH2g0668 . 27 545 GRAS Transcription Factor Family AT4G17230 51.7 5.4e-144 508.1
HCH12g1143 . 200 580 GRAS Transcription Factor Family AT4G17230 52.0 4.6e-111 398.7
HCH2g0668 . 134 545 GRAS Transcription Factor Family AT2G04890 65.9 3.0e-158 555.1
HCH6g0857 . 163 541 GRAS Transcription Factor Family AT2G04890 64.4 1.8e-142 502.7
HCH12g1143 . 202 580 GRAS Transcription Factor Family AT2G04890 59.4 4.5e-130 461.5
HCH14g0760 . 170 548 GRAS Transcription Factor Family AT2G04890 59.9 4.2e-128 454.9
HCH8g0416 . 1 472 GRAS Transcription Factor Family AT1G50420 66.1 3.7e-176 614.8
HCH1g0652 . 1 466 GRAS Transcription Factor Family AT1G50420 61.6 4.9e-160 561.2
HCH6g1008 . 418 786 GRAS Transcription Factor Family AT4G00150 55.0 4.4e-104 375.6
HCH14g0562 . 1 589 GRAS Transcription Factor Family AT3G50650 51.3 3.2e-152 535.4
HCH9g0872 . 153 764 GRAS Transcription Factor Family AT3G54220 66.1 3.8e-208 721.5
HCH6g0508 . 73 450 GRAS Transcription Factor Family AT3G54220 61.7 1.1e-133 474.2
HCH5g1321 . 102 463 GRAS Transcription Factor Family AT3G54220 50.5 2.7e-97 353.2
HCH14g0363 . 97 490 GRAS Transcription Factor Family AT4G37650 68.5 2.0e-159 559.3
HCH10g0056 . 65 454 GRAS Transcription Factor Family AT4G37650 52.6 2.7e-119 426.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34137 PF03514 GRAS 1.90E-133 CL0063 HCH TF