Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0424 | ATGAAGAGAGATCACAAACACAGCCGATCTGAAAATGGCACCTACGGCGGCGCCGTGAAACCCGAAATCCCATCCCCTTCAAGTACTAAATCATCCAAGATGTGGCAAGACGACGACGAAATAAATCATCAACAACACGACGCCGGCGGCGGGGAAGATGAGCATCTCGCCGTTTTGGGTTACAATGTCCGGGCGTCGGAAATGGCTGACGTGGCTCAGAAACTGGAACAGCTGGAGATGGTCATGGTTTCTTCAGAAGAAGAGGGAATTTCTCACCTTTCTTCCAACACCGTCCATTACAATCCCTCCGATCTCTCCGCTTGGGTTCAAAGCATGCTTTCAGAGCTCAATAGCCCCCTTCAATCCCAACAACGAATCGATGACCCAATTCTCGCTATTCAAGAATCCAATTCCGTCGTTTTTAAAGACGATTCCGAATACGATCTCAGAGCAATCCCCGGCGTCGCCGCTTACCCTCCGAGTCCGACTCCGAGTCCCAAGAAACGTTTGAAGAAATCAGTTTCAGACCCGGCAACCGTGTCGGGTTCTTCCGAACCGTCACGGTCGGTTGTTTTAGTTGATTCACAAGACACCGGTGTACGGCTGGTCCACACACTCCTCGCTTGCGCAGAGGCCGTACAACAAAACAACCTCGAACTCGCCGATGCTTTGTTGAAACACATCGGTCTTCTGGCGGCGTCTCAGGCCGGTGCTATGCGGAAAGTCGCGACGTATTTCGCCGAAGCTTTAGCTCGCCGGATTTACCGAATCCACCCCCGAGATTGCTTGGATTCTTCCTACACCGATCTTCTCCAAATGCATTTTTACGAATCTTGCCCTTACCTCAAATTCGCTCATTTCACGGCGAATCAAGCTATCCTAGAAGCTTTCTCCACCGCTTCTCAGGTTCACGTTATTGATTTCAGTCTTCAACAGGGTCTTCAATGGCCGGCCTTGATTCAAGCTCTCGCTTTGCGCCCTGGCGGCCCACCGTTGTTTCGGTTAACGGGCATCGGCCCGCCGCAGCCGCTCGACGATACCGATGCTTTACAGCAAGTGGGATGGAAGTTGGCTCAATTGGCTGACGCCATTGGCGTTAAGTTTGAATTTCGTGGTTTTTTCTGCAATAGTCTTGCTGATCTTGAACCGGAGATGCTCGATTTACGCCCCGCCGACGTCGAGACCGTGGCGGTAAACTCCGTCTTCGAGCTCCATCAGTTACTAGCTCGCCCCGGAGCTATAGAGAAGGTCTTGTATTCAATCAAAGCTTTGAACCCCAAGATCGTCACCGTCGTTGAACAGGTAGCGAATCACAACGGCCCGGTTTTTCTGGACCGGTTTACGGAAGCCTTACATTACTATTCGAGTTTATTCGACTCTTTGGAAGGGTCGGCTCCTTCGACCGGGTTAACGACACCGAGTCAGGATGTGGTTATGTCTGAGGTTTATTTAGCGAGGCAGATTTGCAATGTCGTGGCTTGTGAAGGACCGGACCGGGTCGAGCGACACGAGACATTGGATCAGTGGCGGGATCGGTTTGGTTCGGCCGGGTTCGACTTGGTTCATCTTGGGTCTAATGCGTTTAAACAAGCTAGTACTTTACTAGCTCTATTCGCCGGCGGCGATGGGTATAGGGTTGAAGAGAGTAATGGTTGTTTAATGCTTGGTTGGCATACTCGGCCGCTTATCGCTACCTCGACTTGGTCGGTCTCATCGGACTCCTCGGATAATTCGGTTATAATCGCCTGA | 1749 | 51.4 | MKRDHKHSRSENGTYGGAVKPEIPSPSSTKSSKMWQDDDEINHQQHDAGGGEDEHLAVLGYNVRASEMADVAQKLEQLEMVMVSSEEEGISHLSSNTVHYNPSDLSAWVQSMLSELNSPLQSQQRIDDPILAIQESNSVVFKDDSEYDLRAIPGVAAYPPSPTPSPKKRLKKSVSDPATVSGSSEPSRSVVLVDSQDTGVRLVHTLLACAEAVQQNNLELADALLKHIGLLAASQAGAMRKVATYFAEALARRIYRIHPRDCLDSSYTDLLQMHFYESCPYLKFAHFTANQAILEAFSTASQVHVIDFSLQQGLQWPALIQALALRPGGPPLFRLTGIGPPQPLDDTDALQQVGWKLAQLADAIGVKFEFRGFFCNSLADLEPEMLDLRPADVETVAVNSVFELHQLLARPGAIEKVLYSIKALNPKIVTVVEQVANHNGPVFLDRFTEALHYYSSLFDSLEGSAPSTGLTTPSQDVVMSEVYLARQICNVVACEGPDRVERHETLDQWRDRFGSAGFDLVHLGSNAFKQASTLLALFAGGDGYRVEESNGCLMLGWHTRPLIATSTWSVSSDSSDNSVIIA | 582 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2657757 | 2659505 | - | evm.model.ptg000007l.424 | HCH9g0424 | 551056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0424 | 582 | SMART | DELLA_2 | 53 | 126 | - | - | |
HCH9g0424 | 582 | MobiDBLite | consensus disorder prediction | 33 | 53 | - | - | |
HCH9g0424 | 582 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
HCH9g0424 | 582 | ProSiteProfiles | GRAS family profile. | 193 | 569 | IPR005202 | - | |
HCH9g0424 | 582 | Pfam | Transcriptional regulator DELLA protein N terminal | 53 | 119 | IPR021914 | - | |
HCH9g0424 | 582 | MobiDBLite | consensus disorder prediction | 153 | 188 | - | - | |
HCH9g0424 | 582 | Pfam | GRAS domain family | 202 | 568 | IPR005202 | - | |
HCH9g0424 | 582 | Gene3D | - | 51 | 116 | IPR038088 | - | |
HCH9g0424 | 582 | Coils | Coil | 68 | 88 | - | - | |
HCH9g0424 | 582 | FunFam | DELLA protein GAI | 51 | 116 | - | - | |
HCH9g0424 | 582 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 175 | 568 | IPR005202 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH6g0857 | HCH-Chr6:43379011 | HCH9g0424 | HCH-Chr9:2657757 | 1.30E-55 | dispersed | |
HCH13g0958 | HCH-Chr13:14118343 | HCH9g0424 | HCH-Chr9:2657757 | 2.70E-79 | transposed | |
HCH5g1321 | HCH-Chr5:50121650 | HCH9g0424 | HCH-Chr9:2657757 | 1.60E-43 | transposed | |
HCH6g0928 | HCH-Chr6:44058399 | HCH9g0424 | HCH-Chr9:2657757 | 1.30E-50 | transposed | |
HCH6g0938 | HCH-Chr6:44180497 | HCH9g0424 | HCH-Chr9:2657757 | 1.80E-56 | transposed | |
HCH8g0794 | HCH-Chr8:44538125 | HCH9g0424 | HCH-Chr9:2657757 | 7.80E-119 | transposed | |
HCH8g1450 | HCH-Chr8:48990978 | HCH9g0424 | HCH-Chr9:2657757 | 5.80E-58 | transposed | |
HCH9g0872 | HCH-Chr9:6250684 | HCH9g0424 | HCH-Chr9:2657757 | 7.10E-60 | transposed | |
HCH10g1334 | HCH-Chr10:45879793 | HCH9g0424 | HCH-Chr9:2657757 | 3.30E-176 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34137 | PF03514 | GRAS | 1.90E-133 | CL0063 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0424 | K14494 | - | mdm:103405830 | 803.127 |