Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0424 ATGAAGAGAGATCACAAACACAGCCGATCTGAAAATGGCACCTACGGCGGCGCCGTGAAACCCGAAATCCCATCCCCTTCAAGTACTAAATCATCCAAGATGTGGCAAGACGACGACGAAATAAATCATCAACAACACGACGCCGGCGGCGGGGAAGATGAGCATCTCGCCGTTTTGGGTTACAATGTCCGGGCGTCGGAAATGGCTGACGTGGCTCAGAAACTGGAACAGCTGGAGATGGTCATGGTTTCTTCAGAAGAAGAGGGAATTTCTCACCTTTCTTCCAACACCGTCCATTACAATCCCTCCGATCTCTCCGCTTGGGTTCAAAGCATGCTTTCAGAGCTCAATAGCCCCCTTCAATCCCAACAACGAATCGATGACCCAATTCTCGCTATTCAAGAATCCAATTCCGTCGTTTTTAAAGACGATTCCGAATACGATCTCAGAGCAATCCCCGGCGTCGCCGCTTACCCTCCGAGTCCGACTCCGAGTCCCAAGAAACGTTTGAAGAAATCAGTTTCAGACCCGGCAACCGTGTCGGGTTCTTCCGAACCGTCACGGTCGGTTGTTTTAGTTGATTCACAAGACACCGGTGTACGGCTGGTCCACACACTCCTCGCTTGCGCAGAGGCCGTACAACAAAACAACCTCGAACTCGCCGATGCTTTGTTGAAACACATCGGTCTTCTGGCGGCGTCTCAGGCCGGTGCTATGCGGAAAGTCGCGACGTATTTCGCCGAAGCTTTAGCTCGCCGGATTTACCGAATCCACCCCCGAGATTGCTTGGATTCTTCCTACACCGATCTTCTCCAAATGCATTTTTACGAATCTTGCCCTTACCTCAAATTCGCTCATTTCACGGCGAATCAAGCTATCCTAGAAGCTTTCTCCACCGCTTCTCAGGTTCACGTTATTGATTTCAGTCTTCAACAGGGTCTTCAATGGCCGGCCTTGATTCAAGCTCTCGCTTTGCGCCCTGGCGGCCCACCGTTGTTTCGGTTAACGGGCATCGGCCCGCCGCAGCCGCTCGACGATACCGATGCTTTACAGCAAGTGGGATGGAAGTTGGCTCAATTGGCTGACGCCATTGGCGTTAAGTTTGAATTTCGTGGTTTTTTCTGCAATAGTCTTGCTGATCTTGAACCGGAGATGCTCGATTTACGCCCCGCCGACGTCGAGACCGTGGCGGTAAACTCCGTCTTCGAGCTCCATCAGTTACTAGCTCGCCCCGGAGCTATAGAGAAGGTCTTGTATTCAATCAAAGCTTTGAACCCCAAGATCGTCACCGTCGTTGAACAGGTAGCGAATCACAACGGCCCGGTTTTTCTGGACCGGTTTACGGAAGCCTTACATTACTATTCGAGTTTATTCGACTCTTTGGAAGGGTCGGCTCCTTCGACCGGGTTAACGACACCGAGTCAGGATGTGGTTATGTCTGAGGTTTATTTAGCGAGGCAGATTTGCAATGTCGTGGCTTGTGAAGGACCGGACCGGGTCGAGCGACACGAGACATTGGATCAGTGGCGGGATCGGTTTGGTTCGGCCGGGTTCGACTTGGTTCATCTTGGGTCTAATGCGTTTAAACAAGCTAGTACTTTACTAGCTCTATTCGCCGGCGGCGATGGGTATAGGGTTGAAGAGAGTAATGGTTGTTTAATGCTTGGTTGGCATACTCGGCCGCTTATCGCTACCTCGACTTGGTCGGTCTCATCGGACTCCTCGGATAATTCGGTTATAATCGCCTGA 1749 51.4 MKRDHKHSRSENGTYGGAVKPEIPSPSSTKSSKMWQDDDEINHQQHDAGGGEDEHLAVLGYNVRASEMADVAQKLEQLEMVMVSSEEEGISHLSSNTVHYNPSDLSAWVQSMLSELNSPLQSQQRIDDPILAIQESNSVVFKDDSEYDLRAIPGVAAYPPSPTPSPKKRLKKSVSDPATVSGSSEPSRSVVLVDSQDTGVRLVHTLLACAEAVQQNNLELADALLKHIGLLAASQAGAMRKVATYFAEALARRIYRIHPRDCLDSSYTDLLQMHFYESCPYLKFAHFTANQAILEAFSTASQVHVIDFSLQQGLQWPALIQALALRPGGPPLFRLTGIGPPQPLDDTDALQQVGWKLAQLADAIGVKFEFRGFFCNSLADLEPEMLDLRPADVETVAVNSVFELHQLLARPGAIEKVLYSIKALNPKIVTVVEQVANHNGPVFLDRFTEALHYYSSLFDSLEGSAPSTGLTTPSQDVVMSEVYLARQICNVVACEGPDRVERHETLDQWRDRFGSAGFDLVHLGSNAFKQASTLLALFAGGDGYRVEESNGCLMLGWHTRPLIATSTWSVSSDSSDNSVIIA 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2657757 2659505 - evm.model.ptg000007l.424 HCH9g0424 551056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0424 582 SMART DELLA_2 53 126 - -
HCH9g0424 582 MobiDBLite consensus disorder prediction 33 53 - -
HCH9g0424 582 MobiDBLite consensus disorder prediction 1 53 - -
HCH9g0424 582 ProSiteProfiles GRAS family profile. 193 569 IPR005202 -
HCH9g0424 582 Pfam Transcriptional regulator DELLA protein N terminal 53 119 IPR021914 -
HCH9g0424 582 MobiDBLite consensus disorder prediction 153 188 - -
HCH9g0424 582 Pfam GRAS domain family 202 568 IPR005202 -
HCH9g0424 582 Gene3D - 51 116 IPR038088 -
HCH9g0424 582 Coils Coil 68 88 - -
HCH9g0424 582 FunFam DELLA protein GAI 51 116 - -
HCH9g0424 582 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 175 568 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0857 HCH-Chr6:43379011 HCH9g0424 HCH-Chr9:2657757 1.30E-55 dispersed
HCH13g0958 HCH-Chr13:14118343 HCH9g0424 HCH-Chr9:2657757 2.70E-79 transposed
HCH5g1321 HCH-Chr5:50121650 HCH9g0424 HCH-Chr9:2657757 1.60E-43 transposed
HCH6g0928 HCH-Chr6:44058399 HCH9g0424 HCH-Chr9:2657757 1.30E-50 transposed
HCH6g0938 HCH-Chr6:44180497 HCH9g0424 HCH-Chr9:2657757 1.80E-56 transposed
HCH8g0794 HCH-Chr8:44538125 HCH9g0424 HCH-Chr9:2657757 7.80E-119 transposed
HCH8g1450 HCH-Chr8:48990978 HCH9g0424 HCH-Chr9:2657757 5.80E-58 transposed
HCH9g0872 HCH-Chr9:6250684 HCH9g0424 HCH-Chr9:2657757 7.10E-60 transposed
HCH10g1334 HCH-Chr10:45879793 HCH9g0424 HCH-Chr9:2657757 3.30E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34137 PF03514 GRAS 1.90E-133 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0424 K14494 - mdm:103405830 803.127