Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0425 ATGGCGACGCTGATGTCGAGCTCCAGAATTCAACCTTGTATTCTTTCATCTTCCATCAAACACCTTGCCTTTAATTCAACCCTCGCTTCCAATTCCTCTGTTTTTAAACACAATTCATCCTCGTACTTGATCAGGCGCTCTGGACCTCACCGAATTCTCTCTGTTTCCATGTCGGCTACCCCTCTTCAAATCTGTGTCAAAGCTTCCACCACTCTTCCCGACAAGCCCGGCGACTGCCCGTTTTGCCAAAGGGTGTTACTGACATTGGAGGAAAAACATCTATCTTATGACCTGAAGTTGGTAGATTTAGGAAACAAGCCAGAATGGTTCTTAAAAATCAATTCTGAGGGCAAAGTCCCTGTGATTAAATTCGATGAGCAGTGGATCGCAGATTCAGATGTTATTACACAGATATTGGAAGAGAAGTATCCTAATCCGCCTTTAGCGACCCCTCCTGACAAGTCTTCTGTAGGGTCAAAAATCTTCTCTACATTTATTGCTTTTCTCAAGAGCAAGGATCCTAATGATGGAACAGAACAAGCATTGCTTAGCGAGCTAACTTCTTTCAATGATTACATCAAAGAGAATGGTCCTTTTATCAATGGGAAAGAGATTTCTGCTGCAGACTTGTCACTTGGTCCAAAATTGTACCATCTAGAAATTGTATTGGGTCACTACAAGAATTGGTCCGTTCCAGACAGCCTACCCTATGTCAAGTCTTACATGAAGAGCATATTCTCGAAAGAGTCGTTCGTAAAAACACGTGCACTCCCTGAGGATGTTATTGCCGGTTGGCGCCCGAAGGTCTTGGGTTAG 816 43.5 MATLMSSSRIQPCILSSSIKHLAFNSTLASNSSVFKHNSSSYLIRRSGPHRILSVSMSATPLQICVKASTTLPDKPGDCPFCQRVLLTLEEKHLSYDLKLVDLGNKPEWFLKINSEGKVPVIKFDEQWIADSDVITQILEEKYPNPPLATPPDKSSVGSKIFSTFIAFLKSKDPNDGTEQALLSELTSFNDYIKENGPFINGKEISAADLSLGPKLYHLEIVLGHYKNWSVPDSLPYVKSYMKSIFSKESFVKTRALPEDVIAGWRPKVLG 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2673207 2675878 + evm.model.ptg000007l.425 HCH9g0425 551057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0425 271 FunFam Glutathione S-transferase DHAR3, chloroplastic 149 271 - -
HCH9g0425 271 SFLD Main (cytGST) 78 244 - -
HCH9g0425 271 Gene3D - 149 270 - -
HCH9g0425 271 FunFam Glutathione S-transferase DHAR3 chloroplastic 60 148 - -
HCH9g0425 271 Gene3D Glutaredoxin 60 148 - -
HCH9g0425 271 Pfam Glutathione S-transferase, N-terminal domain 78 147 IPR004045 -
HCH9g0425 271 SFLD Glutathione Transferase (cytosolic) 78 244 IPR040079 -
HCH9g0425 271 CDD GST_N_family 79 140 - -
HCH9g0425 271 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 62 268 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(PANTHER)|GO:0045174(InterPro)|GO:0098869(InterPro)
HCH9g0425 271 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 69 147 IPR004045 -
HCH9g0425 271 CDD GST_C_DHAR 148 268 - -
HCH9g0425 271 SUPERFAMILY GST C-terminal domain-like 142 268 IPR036282 -
HCH9g0425 271 SUPERFAMILY Thioredoxin-like 78 146 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0425 K21888 - - csv:101203335 456.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0490 HCH-Chr1:53707843 HCH9g0425 HCH-Chr9:2673207 4.40E-73 dispersed
HCH1g0491 HCH-Chr1:53721209 HCH9g0425 HCH-Chr9:2673207 4.60E-70 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1003 . 1 209 Glutathione S-transferase Gene Family AT4G02520 59.0 1.4e-63 239.6
HCH4g1005 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.5 9.3e-63 236.9
HCH4g1004 . 1 209 Glutathione S-transferase Gene Family AT4G02520 56.6 6.7e-61 230.7
HCH4g1005 . 1 210 Glutathione S-transferase Gene Family AT2G02930 59.2 2.9e-64 241.9
HCH4g1003 . 1 210 Glutathione S-transferase Gene Family AT2G02930 59.2 1.4e-63 239.6
HCH4g1004 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 3.2e-63 238.4
HCH4g1003 . 5 214 Glutathione S-transferase Gene Family AT1G02950 55.5 1.0e-63 240.4
HCH4g1004 . 5 206 Glutathione S-transferase Gene Family AT1G02950 57.1 2.9e-63 238.8
HCH4g1005 . 5 206 Glutathione S-transferase Gene Family AT1G02950 57.1 1.9e-62 236.1
HCH4g1003 . 5 213 Glutathione S-transferase Gene Family AT1G02940 50.5 2.5e-54 209.1
HCH4g1005 . 5 206 Glutathione S-transferase Gene Family AT1G02940 52.7 3.6e-53 205.3
HCH4g1004 . 5 208 Glutathione S-transferase Gene Family AT1G02940 51.2 4.7e-53 204.9
HCH4g1003 . 1 210 Glutathione S-transferase Gene Family AT1G02930 57.6 4.1e-63 238.0
HCH4g1005 . 1 210 Glutathione S-transferase Gene Family AT1G02930 56.2 2.7e-62 235.3
HCH4g1004 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 1.7e-61 232.6
HCH4g1003 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.6 2.8e-64 241.9
HCH4g1004 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.7 6.3e-64 240.7
HCH4g1005 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 1.4e-63 239.6
HCH4g1003 . 1 215 Glutathione S-transferase Gene Family AT2G47730 61.1 2.6e-70 262.3
HCH4g1005 . 1 214 Glutathione S-transferase Gene Family AT2G47730 60.0 4.5e-67 251.5
HCH4g1004 . 1 214 Glutathione S-transferase Gene Family AT2G47730 59.5 1.0e-66 250.4
HCH4g1002 . 1 213 Glutathione S-transferase Gene Family AT3G62760 60.6 1.2e-78 289.7
HCH4g1003 . 19 215 Glutathione S-transferase Gene Family AT1G49860 51.0 2.4e-49 192.6
HCH7g1515 . 3 206 Glutathione S-transferase Gene Family AT2G29450 50.5 3.3e-50 195.3
HCH9g0729 . 3 222 Glutathione S-transferase Gene Family AT3G09270 54.5 9.2e-69 256.9
HCH9g0727 . 3 217 Glutathione S-transferase Gene Family AT3G09270 54.9 1.6e-65 246.1
HCH9g0728 . 2 216 Glutathione S-transferase Gene Family AT3G09270 54.4 2.1e-65 245.7
HCH9g0726 . 3 213 Glutathione S-transferase Gene Family AT3G09270 54.0 9.8e-63 236.9
HCH7g1512 . 3 213 Glutathione S-transferase Gene Family AT3G09270 50.2 6.2e-57 217.6
HCH1g0972 . 3 219 Glutathione S-transferase Gene Family AT1G69930 56.7 1.4e-67 253.1
HCH1g0973 . 3 219 Glutathione S-transferase Gene Family AT1G69930 51.6 6.6e-62 234.2
HCH1g0974 . 3 220 Glutathione S-transferase Gene Family AT1G69930 51.8 9.6e-61 230.3
HCH1g0972 . 1 218 Glutathione S-transferase Gene Family AT1G27130 52.5 2.6e-63 238.8
HCH1g0974 . 1 219 Glutathione S-transferase Gene Family AT1G27130 52.5 8.4e-62 233.8
HCH1g0972 . 1 218 Glutathione S-transferase Gene Family AT1G27140 50.5 3.0e-57 218.8
HCH1g0972 . 4 216 Glutathione S-transferase Gene Family AT1G59670 56.3 4.0e-67 251.5
HCH1g0973 . 4 216 Glutathione S-transferase Gene Family AT1G59670 52.1 1.4e-59 226.5
HCH1g0974 . 4 217 Glutathione S-transferase Gene Family AT1G59670 50.2 2.4e-59 225.7
HCH1g0972 . 4 226 Glutathione S-transferase Gene Family AT1G59700 53.8 1.5e-66 249.6
HCH1g0974 . 3 231 Glutathione S-transferase Gene Family AT1G59700 50.9 5.4e-64 241.1
HCH1g0972 . 1 226 Glutathione S-transferase Gene Family AT1G10370 63.4 6.2e-81 297.4
HCH1g0973 . 1 220 Glutathione S-transferase Gene Family AT1G10370 57.5 5.8e-71 264.2
HCH1g0974 . 1 219 Glutathione S-transferase Gene Family AT1G10370 58.6 2.5e-66 248.8
HCH1g0972 . 1 226 Glutathione S-transferase Gene Family AT1G10360 59.9 1.7e-75 279.3
HCH1g0973 . 1 218 Glutathione S-transferase Gene Family AT1G10360 56.6 7.9e-68 253.8
HCH1g0974 . 1 224 Glutathione S-transferase Gene Family AT1G10360 54.7 2.4e-64 242.3
HCH6g0589 . 1 216 Glutathione S-transferase Gene Family AT1G78380 72.2 6.4e-91 330.5
HCH6g0654 . 1 216 Glutathione S-transferase Gene Family AT1G78380 72.7 6.4e-91 330.5
HCH6g0590 . 1 215 Glutathione S-transferase Gene Family AT1G78380 66.5 8.1e-86 313.5
HCH6g0652 . 1 215 Glutathione S-transferase Gene Family AT1G78380 66.5 1.1e-85 313.2
HCH6g0656 . 1 219 Glutathione S-transferase Gene Family AT1G78380 67.6 1.2e-81 299.7
HCH6g0584 . 1 219 Glutathione S-transferase Gene Family AT1G78380 66.7 8.6e-80 293.5
HCH6g0653 . 1 216 Glutathione S-transferase Gene Family AT1G78380 62.5 1.5e-79 292.7
HCH10g1077 . 4 217 Glutathione S-transferase Gene Family AT1G78380 54.4 5.6e-63 237.7
HCH6g0654 . 7 214 Glutathione S-transferase Gene Family AT1G78370 63.5 3.6e-78 288.1
HCH6g0589 . 7 214 Glutathione S-transferase Gene Family AT1G78370 63.0 1.4e-77 286.2
HCH6g0584 . 7 220 Glutathione S-transferase Gene Family AT1G78370 61.7 1.3e-75 279.6
HCH6g0656 . 7 220 Glutathione S-transferase Gene Family AT1G78370 61.7 2.8e-75 278.5
HCH6g0590 . 1 216 Glutathione S-transferase Gene Family AT1G78370 59.7 6.3e-75 277.3
HCH6g0652 . 1 216 Glutathione S-transferase Gene Family AT1G78370 59.7 8.3e-75 276.9
HCH6g0653 . 7 214 Glutathione S-transferase Gene Family AT1G78370 59.1 4.5e-73 271.2
HCH10g1077 . 7 215 Glutathione S-transferase Gene Family AT1G78370 54.8 7.3e-63 237.3
HCH6g0654 . 1 216 Glutathione S-transferase Gene Family AT1G78340 61.1 2.6e-76 282.0
HCH6g0590 . 1 214 Glutathione S-transferase Gene Family AT1G78340 60.3 2.2e-75 278.9
HCH6g0652 . 1 214 Glutathione S-transferase Gene Family AT1G78340 60.3 2.2e-75 278.9
HCH6g0589 . 1 214 Glutathione S-transferase Gene Family AT1G78340 60.7 6.4e-75 277.3
HCH6g0653 . 1 216 Glutathione S-transferase Gene Family AT1G78340 57.4 5.1e-72 267.7
HCH6g0656 . 1 218 Glutathione S-transferase Gene Family AT1G78340 59.6 2.5e-71 265.4
HCH6g0584 . 1 218 Glutathione S-transferase Gene Family AT1G78340 59.2 8.1e-70 260.4
HCH10g1077 . 4 215 Glutathione S-transferase Gene Family AT1G78340 53.1 5.8e-60 227.6
HCH6g0584 . 1 218 Glutathione S-transferase Gene Family AT1G78320 52.8 4.5e-56 214.5
HCH6g0590 . 1 205 Glutathione S-transferase Gene Family AT1G78320 50.2 2.9e-55 211.8
HCH6g0652 . 1 205 Glutathione S-transferase Gene Family AT1G78320 50.2 2.9e-55 211.8
HCH6g0654 . 1 215 Glutathione S-transferase Gene Family AT1G78320 50.2 2.9e-55 211.8
HCH6g0656 . 1 218 Glutathione S-transferase Gene Family AT1G78320 52.3 6.5e-55 210.7
HCH6g0589 . 1 209 Glutathione S-transferase Gene Family AT1G78320 50.7 2.5e-54 208.8
HCH6g0653 . 1 205 Glutathione S-transferase Gene Family AT1G78320 50.2 3.6e-53 204.9
HCH6g0654 . 1 218 Glutathione S-transferase Gene Family AT1G17180 66.5 9.0e-85 310.1
HCH6g0589 . 1 218 Glutathione S-transferase Gene Family AT1G17180 65.6 2.0e-84 308.9
HCH6g0656 . 1 223 Glutathione S-transferase Gene Family AT1G17180 64.1 1.9e-79 292.4
HCH6g0653 . 1 219 Glutathione S-transferase Gene Family AT1G17180 60.3 2.5e-79 292.0
HCH6g0584 . 1 223 Glutathione S-transferase Gene Family AT1G17180 63.7 1.3e-78 289.7
HCH6g0590 . 1 215 Glutathione S-transferase Gene Family AT1G17180 59.5 4.0e-77 284.6
HCH6g0652 . 1 215 Glutathione S-transferase Gene Family AT1G17180 59.5 5.3e-77 284.3
HCH10g1077 . 4 220 Glutathione S-transferase Gene Family AT1G17180 52.8 3.3e-63 238.4
HCH3g0865 . 1 167 Glutathione S-transferase Gene Family AT1G17180 53.3 1.1e-47 186.8
HCH6g0654 . 4 217 Glutathione S-transferase Gene Family AT1G17190 60.7 1.4e-74 276.2
HCH6g0589 . 4 217 Glutathione S-transferase Gene Family AT1G17190 59.8 3.2e-74 275.0
HCH6g0656 . 2 219 Glutathione S-transferase Gene Family AT1G17190 58.3 1.4e-69 259.6
HCH6g0584 . 2 221 Glutathione S-transferase Gene Family AT1G17190 57.7 6.9e-69 257.3
HCH6g0652 . 1 215 Glutathione S-transferase Gene Family AT1G17190 53.7 9.0e-69 256.9
HCH6g0590 . 1 215 Glutathione S-transferase Gene Family AT1G17190 53.7 1.5e-68 256.1
HCH6g0653 . 2 217 Glutathione S-transferase Gene Family AT1G17190 53.2 9.9e-68 253.4
HCH6g0656 . 3 221 Glutathione S-transferase Gene Family AT3G43800 56.3 5.4e-69 257.7
HCH6g0654 . 4 215 Glutathione S-transferase Gene Family AT3G43800 57.4 9.3e-69 256.9
HCH6g0589 . 4 212 Glutathione S-transferase Gene Family AT3G43800 57.7 4.6e-68 254.6
HCH6g0653 . 2 212 Glutathione S-transferase Gene Family AT3G43800 55.8 1.8e-67 252.7
HCH6g0584 . 3 220 Glutathione S-transferase Gene Family AT3G43800 54.8 1.6e-65 246.1
HCH6g0590 . 3 214 Glutathione S-transferase Gene Family AT3G43800 54.6 1.6e-65 246.1
HCH6g0652 . 3 214 Glutathione S-transferase Gene Family AT3G43800 54.6 1.6e-65 246.1
HCH6g0654 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.5 2.4e-69 258.8
HCH6g0589 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.5 4.1e-69 258.1
HCH6g0656 . 2 218 Glutathione S-transferase Gene Family AT1G53680 56.0 5.6e-66 247.7
HCH6g0584 . 5 223 Glutathione S-transferase Gene Family AT1G53680 55.0 6.1e-65 244.2
HCH10g1077 . 1 220 Glutathione S-transferase Gene Family AT1G53680 53.3 1.1e-61 233.4
HCH6g0590 . 3 214 Glutathione S-transferase Gene Family AT1G53680 51.4 2.7e-60 228.8
HCH6g0652 . 3 214 Glutathione S-transferase Gene Family AT1G53680 51.4 3.5e-60 228.4
HCH3g0865 . 2 164 Glutathione S-transferase Gene Family AT1G53680 51.5 2.3e-43 172.6
HCH2g0292 . 52 222 Glutathione S-transferase Gene Family AT2G02390 63.2 3.3e-59 224.9
HCH7g1544 . 59 225 Glutathione S-transferase Gene Family AT2G02390 53.3 8.2e-50 193.7
HCH2g0292 . 8 220 Glutathione S-transferase Gene Family AT2G02380 63.4 1.6e-76 282.7
HCH7g1544 . 16 224 Glutathione S-transferase Gene Family AT2G02380 55.5 2.0e-63 239.2
HCH6g1211 . 1 244 Glutathione S-transferase Gene Family AT5G41210 68.9 8.7e-97 350.1
HCH6g1211 . 1 244 Glutathione S-transferase Gene Family AT5G41240 66.0 2.6e-91 333.2
HCH11g0235 . 13 229 Glutathione S-transferase Gene Family AT5G02780 67.6 4.8e-84 307.8
HCH1g0509 . 80 299 Glutathione S-transferase Gene Family AT5G02780 68.0 1.4e-83 306.2
HCH11g0236 . 13 229 Glutathione S-transferase Gene Family AT5G02780 67.1 1.2e-82 303.1
HCH1g0509 . 71 300 Glutathione S-transferase Gene Family AT3G55040 69.3 1.8e-88 322.8
HCH11g0236 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 7.0e-77 284.3
HCH11g0235 . 3 229 Glutathione S-transferase Gene Family AT3G55040 56.6 1.5e-74 276.6
HCH11g0236 . 7 232 Glutathione S-transferase Gene Family AT5G02790 66.5 1.9e-88 322.4
HCH11g0235 . 7 232 Glutathione S-transferase Gene Family AT5G02790 67.0 1.2e-87 319.7
HCH1g0509 . 69 299 Glutathione S-transferase Gene Family AT5G02790 64.2 1.2e-84 309.7
HCH1g0491 . 1 211 Glutathione S-transferase Gene Family AT1G19570 69.3 1.6e-86 315.8
HCH1g0490 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.0 1.8e-82 302.4
HCH9g0425 . 62 269 Glutathione S-transferase Gene Family AT1G19570 59.8 5.8e-73 270.8
HCH1g0491 . 1 212 Glutathione S-transferase Gene Family AT1G75270 74.6 2.3e-93 338.6
HCH1g0490 . 1 212 Glutathione S-transferase Gene Family AT1G75270 72.8 5.2e-90 327.4
HCH9g0425 . 62 269 Glutathione S-transferase Gene Family AT1G75270 60.3 2.9e-72 268.5
HCH9g0425 . 51 271 Glutathione S-transferase Gene Family AT5G16710 75.1 1.4e-100 362.8
HCH1g0490 . 3 210 Glutathione S-transferase Gene Family AT5G16710 62.0 1.7e-74 276.2
HCH1g0491 . 3 210 Glutathione S-transferase Gene Family AT5G16710 60.6 4.1e-73 271.6
HCH12g0842 . 1 266 Glutathione S-transferase Gene Family AT1G77290 68.0 3.1e-108 388.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010539 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31