Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0433 ATGAAGTTCCGAGAATTGTTAACGCCAATTCTTCTAACTTCATTATCTCTCTTTCCCTTTTTGGTTCTGTCGGATCTTGTCTCCGACAGGGCGGCGCTTGTCGCTTTCCGAGCAGCGATGGGTGGTCGTCCGAGTCTCGAATGGAACCTCTCCGACACCTCTCCTTGTTCCTGGGTCGGTGTCGGTTGTTATCAAAATTCAGTCTTTGAGTTACGTTTTCCGGCAATGGGACTTTCCGGTCAGCTTCCGGTCGGTTTAGGAAATTTGACACAGATTCAAACATTGTCTTTTCGTTTTAATGCTTTGTCGGGTTCGATTCCTGCTGATTTTGCTAATCTTCGTTCTCTCCGGAATTTATACTTGCAAGGAAACTCTTTTTCTGGTGAAATTCCGGGGCTTTTATTTCATTTGCCGAATCTTGTTCGTTTAAATTTGGCTGATAATAATTTTTCTGGGCAAATCCCATCTGGGTTTAATAATCTTACTCGTTTAGCTACTTTGTATTTGGAAAATAATCAGCTTGTTGGAGGGATTCCTGATTTGGATATTTCTCTTGCTCAATTTAACGTTTCTTTTAATCAATTAAATGGGACTATCCCTTTAAAGCTCGCTGGTTTTTCTGCTAGTGCTTTTGAAGGAAATTCTCTCTGTGGGAGTCCTTTACTGTCTTGTAGTACTAATAATTCTACTGAGATTGGTAGTGGAAAGAAGAAGAAGTTATCAAGTGGGGTTATTGCTGGAATTGTGATTGCTAGTTTCTTTGTGTTTTTGCTGATTGTGTTTGTTTTGGTCGTTTTGTGTCGAAGAAAACGTGGTGATAAGTCGGAGTCGAGGGGTTTGGGTTCGGTGGGGGGGACTCGAACCGAGGTCGAAATTCCTGGTGAAAAAACGGTTGGGAGTAGTGATAGTGTAAGTGTTGATCATTTGAGTGTTTCGAAAGAGAAAGTGAAGAGTGGAGGGAAAGATAAGAGTATGGTGTTTTTCGGGAATGTGGCTCATGTGTTTGATTTGGAGGATTTATTGAGGGCGTCAGCGGAGGTATTAGGGAAGGGGACTTTCGGGACTGCTTATAAGGCGACTTTGGAATTGGGGTTGGTTGTTGCAGTGAAGAGGCTTAAGGATATCACGGCATCGGAGAAGGAGTTCCGGGCGAAGATGGAAGAGGTGGGACGGATGAAACATGAAAATTTAGTCTCTCTCAGGGCTTACTATTATAGCAGAGAAGAAAAACTTTTGGTTTTTGATTACATGCCCATGGGTAGCTTATCTGCACTCTTACATGGCAGCAGAGAGGCAGGTAGGACTCCATTGAATTGGGAGGCAAGGTCCGGCATTGCGCTTGGAGCTGCCCGTGGGATTCATTACCTACATTCTCAAGGCCCTACAATCTCTCATGGAAACATCAAGTCTTCAAACATTCTCCTCAATAGGTCTTATGAAGCCTGCGTATCCGATTTCGGCTTTGCTCAGCTTGCAATCTCTCCCTCAACTCCAAGTCGAGTTGCCGGTTACCGTGCCCCAGAGGTCACCGATTCTCGAAAAGTATCACAGAAAGCAGATATCTACAGCTTCGGAGTGTTGCTATTGGAGCTGCTAACAGGGAGAGCTCCTACTAATTCCCTTTTGAATGAAGAAGGTGTAGACCTTCCCAGATGGGCCCAATCTGTAGTTCAAGAGGAATGGACTGCTGAAGTGTTTGATGAAGAACTTCTTAGATACCAGAATGTTGAGGAGGAGATGGTTCAGCTTTTAGAACTTGCTCTGCAGTGTACCACTCCATATCCCGATAATCGCCCGCCAATGGCCGAGGTGACACGACGGATTGAAGAAATTTGTCGCTCCACATCTCAGAGACAGAGTGAGACATATGAGACTGCTTCTGGTGATTTGAATATTGGCAGTTCCACACAGTTCCATTCAGCAAGCTCAGTTGATCCACCAACTGCAGTATAG 1953 44.44 MKFRELLTPILLTSLSLFPFLVLSDLVSDRAALVAFRAAMGGRPSLEWNLSDTSPCSWVGVGCYQNSVFELRFPAMGLSGQLPVGLGNLTQIQTLSFRFNALSGSIPADFANLRSLRNLYLQGNSFSGEIPGLLFHLPNLVRLNLADNNFSGQIPSGFNNLTRLATLYLENNQLVGGIPDLDISLAQFNVSFNQLNGTIPLKLAGFSASAFEGNSLCGSPLLSCSTNNSTEIGSGKKKKLSSGVIAGIVIASFFVFLLIVFVLVVLCRRKRGDKSESRGLGSVGGTRTEVEIPGEKTVGSSDSVSVDHLSVSKEKVKSGGKDKSMVFFGNVAHVFDLEDLLRASAEVLGKGTFGTAYKATLELGLVVAVKRLKDITASEKEFRAKMEEVGRMKHENLVSLRAYYYSREEKLLVFDYMPMGSLSALLHGSREAGRTPLNWEARSGIALGAARGIHYLHSQGPTISHGNIKSSNILLNRSYEACVSDFGFAQLAISPSTPSRVAGYRAPEVTDSRKVSQKADIYSFGVLLLELLTGRAPTNSLLNEEGVDLPRWAQSVVQEEWTAEVFDEELLRYQNVEEEMVQLLELALQCTTPYPDNRPPMAEVTRRIEEICRSTSQRQSETYETASGDLNIGSSTQFHSASSVDPPTAV 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2730744 2732979 - evm.model.ptg000007l.433 HCH9g0433 551065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0433 650 FunFam Probable inactive receptor kinase At1g48480 417 619 - -
HCH9g0433 650 MobiDBLite consensus disorder prediction 614 650 - -
HCH9g0433 650 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515(InterPro)
HCH9g0433 650 Pfam Leucine Rich Repeat 92 113 IPR001611 GO:0005515(InterPro)
HCH9g0433 650 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
HCH9g0433 650 MobiDBLite consensus disorder prediction 615 650 - -
HCH9g0433 650 ProSiteProfiles Protein kinase domain profile. 342 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0433 650 CDD STKc_IRAK 348 611 - -
HCH9g0433 650 FunFam Probable inactive receptor kinase RLK902 26 182 - -
HCH9g0433 650 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524(InterPro)
HCH9g0433 650 SUPERFAMILY L domain-like 46 206 - -
HCH9g0433 650 Pfam Protein kinase domain 346 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0433 650 Gene3D Phosphorylase Kinase; domain 1 308 416 - -
HCH9g0433 650 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
HCH9g0433 650 FunFam pollen receptor-like kinase 1 311 416 - -
HCH9g0433 650 Gene3D Transferase(Phosphotransferase) domain 1 417 634 - -
HCH9g0433 650 Gene3D Ribonuclease Inhibitor 28 134 IPR032675 -
HCH9g0433 650 Gene3D Ribonuclease Inhibitor 139 224 IPR032675 -
HCH9g0433 650 SUPERFAMILY Protein kinase-like (PK-like) 346 608 IPR011009 -
HCH9g0433 650 PANTHER OS05G0588300 PROTEIN 14 617 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1053 HCH-Chr10:35604595 HCH9g0433 HCH-Chr9:2730744 7.40E-148 dispersed
HCH12g1245 HCH-Chr12:12400651 HCH9g0433 HCH-Chr9:2730744 4.70E-48 dispersed
HCH9g0433 HCH-Chr9:2730744 HCH9g0846 HCH-Chr9:5984425 1.20E-100 dispersed
HCH3g0220 HCH-Chr3:1405698 HCH9g0433 HCH-Chr9:2730744 2.00E-164 wgd
HCH3g1056 HCH-Chr3:15478487 HCH9g0433 HCH-Chr9:2730744 2.30E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81753 PF00069 Pkinase 5.90E-37 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0433 - - - 0.0