Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0441 ATGGATTTTTTAATGGAAGGTCATGGAGGTAATGGTGGATCAGGTGATGAACAGGAAGGCTCTAGTGATCGAAAGGGTAAAAAGATTTACCATCGTCATACTTCTCATCAGATTCAAAGACTGGAAGCATTTTTCAAGGAATGCCCACATCCTGATGAAAACCAGCGGCGTCAGCTGAGTCGAGAGCTTCGTCTAGAGTCTAAACAGATAAAATTTTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAATGAGCGAGCAGACAACTCCGCACTTCGGACTGAGAATGAAAAGATTCAATGTGAAAATCTTGCAATTAGAGAAGCATTGAGGAATGTGATCTGTCCATCTTGTGGTGGTCCACCGTTTGGAGAAGAAGAACGGCAGCGCAATCTCCAGAAATTGCGTCTTGAAAACGCTCACCTAAAAGAAGAGCATGAAAAAGTGTCTAACCTTCTTGCAAAGTATATTGGGAAACCAATATCACAACTTGAATCACTATTGCCTATTCTTGGATCTTCGCTGGATTTATCCCCAAGAAGTTCTCTTAGCCAAAGGATTGGAAGTCCTGCAGTTGATCTTACTTCTGATCCTTCAATATTAAATGGAACAGCAACACCCTTCCAATCAAGAGGTATGAATGATTTGGAAAATGCACTTATGTTGGAAGCTGCTGCAACTGCACTGGATGAATTGATCCGACTTTTGAGAGTCAATGAGCCTTTATGGATCAAGACCCAGAATGATGAGAAATACATTCTCCATCGTGACAATTATGACAAAATATTCCCTAGACCCAACCACTTTAAATCTTCTAGTGCTCGTATCGAATCATCAAAAACTTCAGGAATGGTGACAATGAGTGGGATGCAATTGGTTGATATTTTTCTAGATGTGGACAAATGGGCGGATTTTTTCCCAACTGTCATTATAAATGCGGAAACAATCCATGTCATTGACCCTGGGATGCCCGGCAATCGCAGTGGCACTTTACAGCTGATGTACGAACAAATGCATGTGTTTTCACCTCTCGTGTCGCCTCGAGAGTTCTGCTTACTTCGGCATTGTCAGCAAATTGAGCTTGGTGTCTGGGTAATAGCGAATGTATCCTATGAAATCTTAAAGGACAGCAACACCTCTTCCCGTTGCTGGAGGCTTCCTTCTGGGTGCATGATTCAAGAAATGCCTAATGGTTGCTCCAAGCTTACCTGGGTTGAGCATGTGGAAGTGGATGATAAAACACAAACCCATAGGCTCTATCGAGATCTTGTGTGTAGTACTACAGCTTACGGAGCCGAAAGATGGGTTTTCACTCTTCAAAGGATGTGTGAGAGAATGGGTTACACATACAGGGAATATGCACCAGGTCATGAACTTGGAGGAGTGCTAACTTCTCCCGAGGGTAGGAAGAGCATCATGAAGCTGTCACAAAGGATGGTCAAAAAATTTTGTGGTATTCTGAGCATGTCTGGTAAATTAGATTTTCCTCAATTATCCGAAGTGAACAATAGCGGGGTTCGAATCTCGGTTCGGATTAGCACAGAAGTAGGCCAGCCGAGCGGCACAATTGTTAGTGCCGCAACATCTCTTTGGCTTCCCCTAGAACCTGAAAGCATCTTTAACTTCTTCAAGGATGAGAATGCAAGAGTTCAGTGGGATGTTCTCTCTAATGGAAACCCAGTTCATGAAATTGCACACATCTTAGCAGGAGCTGATCCAGGGAACTGTGTATCCATAATTCGGCCGTTCGTCCCGACGGAGAACAACATGCTGATTCTTCAAGAGAGCTGCATAGATCCTTTGGGATCCTTGGTGATATATGCACCCATTGACATGCCAGCCATGAACGTTGCGATAACCGGTCAAGAATCATCCGAGATACCAATACTTCCATCCGGGTTTGTCATCACTGGGGACGGCCGTGCTCATTCAGGAATCGGAGCTTCAACCAGTGGCAATGTCGGGAAGCCAAACCGTTCCCTTTTAACCGTAGCCTTCCAGATACTGGTGTCAAGTGCATCATCTTCAAAACAGCTGAATATGGAGGCTGTGGCAACTGTGAATACTCTTATCAGTTCCACAGTCCAGAGGATCAAGGCTGCATTGAACTGCTCTGGCTTGGATTGA 2130 44.13 MDFLMEGHGGNGGSGDEQEGSSDRKGKKIYHRHTSHQIQRLEAFFKECPHPDENQRRQLSRELRLESKQIKFWFQNKRTQTKAQNERADNSALRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENAHLKEEHEKVSNLLAKYIGKPISQLESLLPILGSSLDLSPRSSLSQRIGSPAVDLTSDPSILNGTATPFQSRGMNDLENALMLEAAATALDELIRLLRVNEPLWIKTQNDEKYILHRDNYDKIFPRPNHFKSSSARIESSKTSGMVTMSGMQLVDIFLDVDKWADFFPTVIINAETIHVIDPGMPGNRSGTLQLMYEQMHVFSPLVSPREFCLLRHCQQIELGVWVIANVSYEILKDSNTSSRCWRLPSGCMIQEMPNGCSKLTWVEHVEVDDKTQTHRLYRDLVCSTTAYGAERWVFTLQRMCERMGYTYREYAPGHELGGVLTSPEGRKSIMKLSQRMVKKFCGILSMSGKLDFPQLSEVNNSGVRISVRISTEVGQPSGTIVSAATSLWLPLEPESIFNFFKDENARVQWDVLSNGNPVHEIAHILAGADPGNCVSIIRPFVPTENNMLILQESCIDPLGSLVIYAPIDMPAMNVAITGQESSEIPILPSGFVITGDGRAHSGIGASTSGNVGKPNRSLLTVAFQILVSSASSSKQLNMEAVATVNTLISSTVQRIKAALNCSGLD 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2808110 2811748 - evm.model.ptg000007l.441 HCH9g0441 551073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0441 709 SMART START_1 224 446 IPR002913 GO:0008289(InterPro)
HCH9g0441 709 Coils Coil 83 103 - -
HCH9g0441 709 SUPERFAMILY Homeodomain-like 13 85 IPR009057 -
HCH9g0441 709 Gene3D - 223 427 IPR023393 -
HCH9g0441 709 CDD START_ArGLABRA2_like 220 445 - -
HCH9g0441 709 ProSiteProfiles START domain profile. 215 449 IPR002913 GO:0008289(InterPro)
HCH9g0441 709 FunFam Homeobox-leucine zipper protein HDG1 14 100 - -
HCH9g0441 709 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 706 IPR042160 -
HCH9g0441 709 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677(InterPro)
HCH9g0441 709 MobiDBLite consensus disorder prediction 1 32 - -
HCH9g0441 709 Pfam Homeodomain 28 82 IPR001356 GO:0003677(InterPro)
HCH9g0441 709 SUPERFAMILY Bet v1-like 217 448 - -
HCH9g0441 709 Coils Coil 126 153 - -
HCH9g0441 709 Pfam START domain 226 446 IPR002913 GO:0008289(InterPro)
HCH9g0441 709 Gene3D - 14 101 - -
HCH9g0441 709 CDD homeodomain 27 85 IPR001356 GO:0003677(InterPro)
HCH9g0441 709 SMART HOX_1 26 88 IPR001356 GO:0003677(InterPro)
HCH9g0441 709 SUPERFAMILY Bet v1-like 498 700 - -
HCH9g0441 709 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0018 HCH-Chr3:158050 HCH9g0441 HCH-Chr9:2808110 1.00E-206 dispersed
HCH7g1594 HCH-Chr7:48243759 HCH9g0441 HCH-Chr9:2808110 3.50E-139 dispersed
HCH9g0441 HCH-Chr9:2808110 HCH7g0229 HCH-Chr7:1529625 3.90E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34139 PF01852 START 3.20E-36 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0441 K09338 - csv:101205899 1193.33