Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0449 ATGGGGGTTCCACAAGTAATGGAAATCCTCAGCGAAAGAGCAGCACTCGTAAGAGAATCATTACAGAAAAGCCAGAACGTTACCGAAAATATGGTCTCTATCTTAGGCTCTTTCGATTACCGTCTCTCCGCACTCGAAACCGCAATGCGGCCTACACAGATAAGAACTCATTCGATTCGGAGAGCGCATGAGAATATTGATAAGACTCTGAAAGCTGCTGATGTTATATTAGCTCAATTTGATCTTACGCGCAAGGCTGAGGCTAAAATACTGAGGGGGCCACATGAGGACTTAGAAAGCTATTTAGAAGCAATTGGTCAATTACGGAGCATTATTCAATTCTTCACGGGAAACAAAAATTTTAAAAGCAGTGATGCTATTCTTAACCATACTAGCAACTTGCTTGCTAAAGCCATTTCAAAGTTAGAGGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCGGTGGAACCAGATCGTCTTTTTGATTGCTTGCCTAACTCTCTGCGTCCATCATCAGCATCTCGGCAGCAAGGTGATAGTGGTAGTAAATGCAATTCTGATCACCCTAACAAAAGCTTAGAAGCTGCCATCTTCATACCTCCAACCCTTATACCTCCGAGGGTTCTTCCATTGTTACATGATTTGGCCCTTCAAATGGTTCATGCTGGCCATCAGCAGCAGCTCTCGAGAATATACAGGGATACTCGTGCTTCAGTTTTGGAACAAAGTCTTAGGAAATTAGGCGTTGAGAGGCTTAGCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCAGTTAAACTTCTGTTTGCTGGAGAAAGGAAAATATGTGATCAAATATTTGATGGTGCTGACTCGCTCAAGGATCAATGTTTTGCTGAAGTTACTGCAAACAGTGTTTCTGTGCTTCTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCCCCAGAAAAATTGTTTGTTCTTTTAGACATGTTTGAAATAATGAGAGAACTACAGTCTGAGATTGAAACACTTTTTGGAAGTAAAGCATGCATTGAAATGCGGGATTCAGCATCGAGCTTGACAAAACGCCTTGCCCAGACAGCTCAAGAGACATTTGGTGATTTTGAAGAAGCTGTGGAAAAAGATGCAACAAAAACCGCTGTTCTTGATGGAACAGTTCATCCCTTGACTAGTTACGTAATAAACTATGTCAAGTTTTTATTTGACTACCAATCGACTCTGAAGCAACTATTCCAAGACTTTGATGACGGTGATCCGGAAGCTCAATTAGCAGCAGTAACTACAAGAATTATGCAGGCCCTTCAGAATAATCTTGATGGAAAGTCCAAGCAATACAAAGATACCGCATTGACTCAATTATTTCTGATGAACAATATTCACTATATAGTGAGATCTGTGAGAAGATCAGAAGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTGCAGCAGCATGCAAATCAATATAAAAGGATTTCTTGGGCAAAGATTTTGCAATGCCTCACTGTTCAGGCCCAAAATTCCTCCGGTAGTGGTGGTTTGTCTGGAGATGCAAGCGGTGGACTTTCAAGAGCAATGGTGAAGGATAGGTTTAAGACTTTCAATATCCAATTCGAAGAGCTTCACCTACGGCAATCGCAATGGACAGTTCCCGATAGTGAGTTGCGGGAGTCTTTGAGATTGGCAGTTGCTGAAGTCTTATTGCCTGCCTACAGATCCTTCCTCAAGCGCTTCGGGCCTATGATTGAGAATGGAAAAAATCCTCAAAAATACATCAGATTCACGCCTGAGGATCTTGAACGTATGCTAAATGAATTCTTTGAGGGCAAAACATTCAACGAACAAAAGCGCTAA 1926 41.8 MGVPQVMEILSERAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAADVILAQFDLTRKAEAKILRGPHEDLESYLEAIGQLRSIIQFFTGNKNFKSSDAILNHTSNLLAKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASRQQGDSGSKCNSDHPNKSLEAAIFIPPTLIPPRVLPLLHDLALQMVHAGHQQQLSRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLKDQCFAEVTANSVSVLLSFGEAIAKSKRSPEKLFVLLDMFEIMRELQSEIETLFGSKACIEMRDSASSLTKRLAQTAQETFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDDGDPEAQLAAVTTRIMQALQNNLDGKSKQYKDTALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQAQNSSGSGGLSGDASGGLSRAMVKDRFKTFNIQFEELHLRQSQWTVPDSELRESLRLAVAEVLLPAYRSFLKRFGPMIENGKNPQKYIRFTPEDLERMLNEFFEGKTFNEQKR 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2885583 2891520 + evm.model.ptg000007l.449 HCH9g0449 551081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0449 641 MobiDBLite consensus disorder prediction 168 189 - -
HCH9g0449 641 Gene3D Exocyst complex component Exo70 74 641 - -
HCH9g0449 641 MobiDBLite consensus disorder prediction 169 189 - -
HCH9g0449 641 SUPERFAMILY Cullin repeat-like 76 632 IPR016159 -
HCH9g0449 641 PANTHER EXOCYST COMPLEX PROTEIN EXO70 13 634 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
HCH9g0449 641 Pfam Exocyst complex component Exo70 N-terminal 69 151 - -
HCH9g0449 641 Pfam Exo70 exocyst complex subunit C-terminal 273 629 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0296 HCH-Chr9:1835650 HCH9g0449 HCH-Chr9:2885583 6.20E-81 dispersed
HCH9g0449 HCH-Chr9:2885583 HCH9g1220 HCH-Chr9:26260349 1.50E-119 dispersed
HCH9g0449 HCH-Chr9:2885583 HCH8g1477 HCH-Chr8:49150171 4.00E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0449 K07195 - csv:105436019 1133.63