Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0455 ATGCGCGGCGGTTCTCGAGCTCCGAACCGGTCGGAGCCACCGCCGCCGTCACGGAACGGTCAGATCCTGCCGCCTCTTAAACGGCACTTAGCTTTCGAGTCCACTAAACCGCCGTTCGCCGCTCCTGCAGGTGATTATTACCGCTTCAGTGGCGATTCTTCTAATTCCTCTCATCAAGAACCTGAAGCTGTTCTTGTTAAACCTTATAAACTAAAGCAGAAGGATGCTAATAACAATGTGGGTGTATCTAATGACTGGATTCATGATCGGGGATCTTCAAAAGATGCGCTAAGTGCTGTTCATACACCGGTGTCTGCAAAAGGAGGAAGGGTGTATAATAAGTCGAAGACTTCAAAGAGAGCTGCATCTGGCCCTCAAACTCCTATCTCAAACCCTTGTCCTTTTTCTCCACTAACTCCAGCTGGAAACTGTCGTTATGATAATTCTCTTGGTCTTTTGACGAAAAAATTTATCAATTTAATTAAGCAAGCAAAGGATGGCATTCTTGACTTAAACAAAGCTGCAGAAACTCTGGAGGTGCAGAAGAGGAGAATATACGACATAACAAATGTTTTGGAGGGCATTGGTCTTATAGAAAAGAAGCTCAAAAACATAATATATTGGAAGGGATTCGATGCACAAGTTCCAGGAAACGTGGATGGTGATACTTCTATGTTGCAGGTGGATATCGAAAAGCTTTCCTTTGAAGAGCATAGATTAGATGATAAGATAAGGGAACTGCAGGAAAGATTGAGGAATCTGAGTGAAGATGAAAATGTCCAAAAATGGCTTTTTGTGACAGAAAAAGACATAAAAAGCTCCCCTTGCTTCCAGAATGAAACACTGATAGCGATTAAAGCTCCACATGGAACCACATTAGAAGTCCCCGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGAATAGTTCTTAGGAGCACAATGGGTCCCATTGATGTATATCTTGTCAGTCAGTTTGAGGAAAAGTTCGAGGAGGTGAATGTGGTCCAGCCACCTAGTAGCTTCCAACTTGCTTCCAGTTCAGGGTCTAATGAACACCTAGCAACTGAAGTAGTAATGGGGGAAAGTAGTAGAAAGGAAATTGAACCTCAAGCAAATGCAAATCAGTCTCACCGTAGCAGCTGTGATATGAATGGGTCGAATGAGTTTCCCAATGGAATGATGAAGATTATTCCTTCTGAAGTTGATAATGATACAGATTACTGGCTATCATTAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACGGATTCAGATATTGCGTGGGATCAATCCGATATCCTTCCCGACGACTTGGTAATATCTGAGTTTAGTACTGAAAGGACAAGACCATCAACTCCACTGTTGGGAACGGGTGAAGTTCCATCTGATGTTAACTTAAGTCAGACGTGA 1422 42.69 MRGGSRAPNRSEPPPPSRNGQILPPLKRHLAFESTKPPFAAPAGDYYRFSGDSSNSSHQEPEAVLVKPYKLKQKDANNNVGVSNDWIHDRGSSKDALSAVHTPVSAKGGRVYNKSKTSKRAASGPQTPISNPCPFSPLTPAGNCRYDNSLGLLTKKFINLIKQAKDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFDAQVPGNVDGDTSMLQVDIEKLSFEEHRLDDKIRELQERLRNLSEDENVQKWLFVTEKDIKSSPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVVQPPSSFQLASSSGSNEHLATEVVMGESSRKEIEPQANANQSHRSSCDMNGSNEFPNGMMKIIPSEVDNDTDYWLSLDAEVSITDMWRTDSDIAWDQSDILPDDLVISEFSTERTRPSTPLLGTGEVPSDVNLSQT 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2913522 2917632 + evm.model.ptg000007l.455 HCH9g0455 551087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0455 473 SUPERFAMILY Winged helix DNA-binding domain 145 208 IPR036390 -
HCH9g0455 473 PANTHER TRANSCRIPTION FACTOR E2F 38 426 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
HCH9g0455 473 MobiDBLite consensus disorder prediction 370 387 - -
HCH9g0455 473 SUPERFAMILY E2F-DP heterodimerization region 224 327 IPR037241 -
HCH9g0455 473 Pfam E2F transcription factor CC-MB domain 226 326 IPR032198 GO:0046983(InterPro)
HCH9g0455 473 FunFam E2F transcription factor 1 139 212 - -
HCH9g0455 473 Gene3D - 218 327 - -
HCH9g0455 473 Coils Coil 161 181 - -
HCH9g0455 473 CDD E2F_DD 226 327 IPR032198 GO:0046983(InterPro)
HCH9g0455 473 Gene3D - 139 212 IPR036388 -
HCH9g0455 473 MobiDBLite consensus disorder prediction 448 473 - -
HCH9g0455 473 MobiDBLite consensus disorder prediction 107 134 - -
HCH9g0455 473 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH9g0455 473 MobiDBLite consensus disorder prediction 365 387 - -
HCH9g0455 473 MobiDBLite consensus disorder prediction 1 61 - -
HCH9g0455 473 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH9g0455 473 Coils Coil 230 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0306 HCH-Chr3:1929942 HCH9g0455 HCH-Chr9:2913522 1.50E-10 transposed
HCH4g0786 HCH-Chr4:5086366 HCH9g0455 HCH-Chr9:2913522 1.40E-56 transposed
HCH2g1292 HCH-Chr2:55039466 HCH9g0455 HCH-Chr9:2913522 9.20E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34142 PF16421 E2F_CC-MB 7.50E-33 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0455 K06620 - csv:101212480 651.358