Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0455 ATGCGCGGCGGTTCTCGAGCTCCGAACCGGTCGGAGCCACCGCCGCCGTCACGGAACGGTCAGATCCTGCCGCCTCTTAAACGGCACTTAGCTTTCGAGTCCACTAAACCGCCGTTCGCCGCTCCTGCAGGTGATTATTACCGCTTCAGTGGCGATTCTTCTAATTCCTCTCATCAAGAACCTGAAGCTGTTCTTGTTAAACCTTATAAACTAAAGCAGAAGGATGCTAATAACAATGTGGGTGTATCTAATGACTGGATTCATGATCGGGGATCTTCAAAAGATGCGCTAAGTGCTGTTCATACACCGGTGTCTGCAAAAGGAGGAAGGGTGTATAATAAGTCGAAGACTTCAAAGAGAGCTGCATCTGGCCCTCAAACTCCTATCTCAAACCCTTGTCCTTTTTCTCCACTAACTCCAGCTGGAAACTGTCGTTATGATAATTCTCTTGGTCTTTTGACGAAAAAATTTATCAATTTAATTAAGCAAGCAAAGGATGGCATTCTTGACTTAAACAAAGCTGCAGAAACTCTGGAGGTGCAGAAGAGGAGAATATACGACATAACAAATGTTTTGGAGGGCATTGGTCTTATAGAAAAGAAGCTCAAAAACATAATATATTGGAAGGGATTCGATGCACAAGTTCCAGGAAACGTGGATGGTGATACTTCTATGTTGCAGGTGGATATCGAAAAGCTTTCCTTTGAAGAGCATAGATTAGATGATAAGATAAGGGAACTGCAGGAAAGATTGAGGAATCTGAGTGAAGATGAAAATGTCCAAAAATGGCTTTTTGTGACAGAAAAAGACATAAAAAGCTCCCCTTGCTTCCAGAATGAAACACTGATAGCGATTAAAGCTCCACATGGAACCACATTAGAAGTCCCCGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGAATAGTTCTTAGGAGCACAATGGGTCCCATTGATGTATATCTTGTCAGTCAGTTTGAGGAAAAGTTCGAGGAGGTGAATGTGGTCCAGCCACCTAGTAGCTTCCAACTTGCTTCCAGTTCAGGGTCTAATGAACACCTAGCAACTGAAGTAGTAATGGGGGAAAGTAGTAGAAAGGAAATTGAACCTCAAGCAAATGCAAATCAGTCTCACCGTAGCAGCTGTGATATGAATGGGTCGAATGAGTTTCCCAATGGAATGATGAAGATTATTCCTTCTGAAGTTGATAATGATACAGATTACTGGCTATCATTAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACGGATTCAGATATTGCGTGGGATCAATCCGATATCCTTCCCGACGACTTGGTAATATCTGAGTTTAGTACTGAAAGGACAAGACCATCAACTCCACTGTTGGGAACGGGTGAAGTTCCATCTGATGTTAACTTAAGTCAGACGTGA 1422 42.69 MRGGSRAPNRSEPPPPSRNGQILPPLKRHLAFESTKPPFAAPAGDYYRFSGDSSNSSHQEPEAVLVKPYKLKQKDANNNVGVSNDWIHDRGSSKDALSAVHTPVSAKGGRVYNKSKTSKRAASGPQTPISNPCPFSPLTPAGNCRYDNSLGLLTKKFINLIKQAKDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFDAQVPGNVDGDTSMLQVDIEKLSFEEHRLDDKIRELQERLRNLSEDENVQKWLFVTEKDIKSSPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVVQPPSSFQLASSSGSNEHLATEVVMGESSRKEIEPQANANQSHRSSCDMNGSNEFPNGMMKIIPSEVDNDTDYWLSLDAEVSITDMWRTDSDIAWDQSDILPDDLVISEFSTERTRPSTPLLGTGEVPSDVNLSQT 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2913522 2917632 + evm.model.ptg000007l.455 HCH9g0455 551087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0455 473 SUPERFAMILY Winged helix DNA-binding domain 145 208 IPR036390 -
HCH9g0455 473 PANTHER TRANSCRIPTION FACTOR E2F 38 426 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
HCH9g0455 473 MobiDBLite consensus disorder prediction 370 387 - -
HCH9g0455 473 SUPERFAMILY E2F-DP heterodimerization region 224 327 IPR037241 -
HCH9g0455 473 Pfam E2F transcription factor CC-MB domain 226 326 IPR032198 GO:0046983(InterPro)
HCH9g0455 473 FunFam E2F transcription factor 1 139 212 - -
HCH9g0455 473 Gene3D - 218 327 - -
HCH9g0455 473 Coils Coil 161 181 - -
HCH9g0455 473 CDD E2F_DD 226 327 IPR032198 GO:0046983(InterPro)
HCH9g0455 473 Gene3D - 139 212 IPR036388 -
HCH9g0455 473 MobiDBLite consensus disorder prediction 448 473 - -
HCH9g0455 473 MobiDBLite consensus disorder prediction 107 134 - -
HCH9g0455 473 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH9g0455 473 MobiDBLite consensus disorder prediction 365 387 - -
HCH9g0455 473 MobiDBLite consensus disorder prediction 1 61 - -
HCH9g0455 473 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH9g0455 473 Coils Coil 230 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0455 K06620 - - csv:101212480 651.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0306 HCH-Chr3:1929942 HCH9g0455 HCH-Chr9:2913522 1.50E-10 transposed
HCH4g0786 HCH-Chr4:5086366 HCH9g0455 HCH-Chr9:2913522 1.40E-56 transposed
HCH2g1292 HCH-Chr2:55039466 HCH9g0455 HCH-Chr9:2913522 9.20E-140 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34142 PF16421 E2F_CC-MB 7.50E-33 No_clan HCH TF