Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0508 ATGAGTTCCATTTCTGGTACTTGTGAAATTGTAGAAGCAAGGGAAGAAATAAATCCTGTTCAAAATAAGGTAGGATCTCGCCAGCCGAGTTTTGTATCAAATGACAAAGATCGGAAACTTCCTCCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGGCAATTAATCTTAAAAATTCATTTAAGAGTTCAGGTCATTCACAAGTAGATGCAAGCCCATCAAGGAAAAGTGCACTTAAGAAGCCAATATCGGTTGGCATACCTCGCTCACCAGGTATTGGGACTTCAGATTCAGGTAGTCTGAAGCAAGCACTCAGGGAACTATGCCTTTCTAAGGCATCTGAAATGGCTGCTATAAAGCGATCATCAAAATCAGCTAGTTCTTCAAGACTCTCAGAAGCTGGGCGGATCAAGACATTGTACGATTCAGTTCTAGTTGAAGCCACTCAACCAGGCTCTTCAGCAGATAATGGTAAGGGGAGCGTGGTTGAAATATCCTTGGTTCCAGAGGAAAAGAATGTAAACTCTGAGAAGTCTCTCAAGCATGTTCAGGAACCTGCTATTAAGTCATTAGCTAAAAGTTCTCATTCTTCTCTTCACTTGCCAGTTCTTAAAACACAAAATTGTGGTGAAATTTCCGTGGTGCAAAATGAGGATGCCACCTTGTCAAGGAAAGTTCGGTCTCAAACATTAAAAGCAGAGCTAGAAAAGGAAGATGAGTCTATACCTTCACCATCTATATCTTCTAACACTATTCGTGGGGTATTAGAGAAGGATAAGAAAGTTCTTGCCTCGAGCAAGGTAGCAAATAAAGCGTCAACACCAAAGCCAGGACGGAAAGGCAGGTTGCAAACTGCATCGTCATCTAAATTGGGTAATGGCCATAAGATAAGCAAGTTATCCAGAAGTACCTCCCGGTCTGTTAAACCGGTTATTAGGAACAAGGGGTTGGCTAAGAAGAAAGTTAAACAGGATTTGAGTTCTTCTACATGTACTTCAAGCACATACAATGTAGTCAATGGCGAGCTGGATCCTAGTGGAAGACAGTTGATTTGTGAGAGGTGCCACTGCGCGTTGAATGGTGCAACTAAAGAATCAAAGAAAGGTTCTGTAGCATCTCAGTCTACCAGTCTTAGTATTGATGTGAACATGACTAATTCAAAATCTGGTGGTAACAAATTGGGCATCACTATGGACAGCAAAGCTTCTGATATTCGGGTAAAAAGGAATACAAGAATACGAGATAAGGGTGAGTTTTCTCAGAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGTAGTACAACAAGTATAAGTGATGACAGCAATGGACATGGCTCTGGTAATTGTAGTAACAGACCTCACATGTCAAAAGATGTTAGGTGGGAAGCCATACGCCATGCTCAAATGCAGCATGGAATCCTCAGCTTGAGGCACTTCAATCTTTTAAAGAAGCTTGGTTGCGGGGACATTGGAACCGTGTATCTTGCTGAGCTAACTGGCACAAGTTGCTTATTTGCCATTAAGGTCATGGACAATGAGTTTTTAGCAAGAAGGAAGAAGATGCCCAGAGCCCAAACTGAGAGAGAAATATTGAGAATGCTGGACCATCCATTCCTCCCGACACTTTATGTTCAATTTACGTCAGATAATCTTTCTTGTCTTGTCATGGAGTATTGTCCAGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGCAGAGTTTTTCCTGAGCCAGCAGCAAGATTTTATGTTGCTGAAGTCCTCCTTGCTCTGGAGTACTTACACATGCTTGGAGTTATTTATCGAGATTTAAAACCTGAAAACATTCTGGTCAGGGAAGATGGTCACATTATGCTCACAGACTTTGACCTGTCACTCAGGTGCACAGTCAATCCAACTCTCCTGAAATCATCATCCTTCAATGCAGAGTCAGCGAGGACATCGGGTCCATGTACAGATTCTAGTTGTGTTGAGCCATTTTGTATCCAACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTTTTACCTGCTGCTGCCAAAACAAGGAAGTTGAAACCTGACCTTGCAACACAGGTCAAGTCATTGCCGCAGCTTGTTGCTGAACCCACTGATGCACGGTCCAATTCATTCGTCGGCACACATGAGTATTTGGCTCCTGAGATCATTAAAGGAGAGGGTCACGGAGCCGCAGTTGATTGGTGGACATTTGGTGTTTTTCTCTACGAGCTTCTATATGGCCGAACTCCTTTCAAGGGTTCCAATAATGAAGAAACACTGGCCAATGTGGTTTTGCAGAGCCTCAGTTTTCCCGACAGCCCATTCGTTGGTTTCCAGGCAAGGGATCTTATCCGAGGGCTCTTGGTAAAAGAACCCGAGAACCGATTCGGGTCAGAGAAAGGGGCTGCCGAAATCAAGCAGCATCCATTTTTCGAGGGACTAAACTGGGCATTGATCCGTTGTGCAATTCCACCAGAACTTCCTGAGTTTTGTGATATGGACATTCCAAGCATGATTGCTCAACAAAACAAGTTCAGGTATTTGGAAAGCAAGTCAACTGGAGAACATCTGGAATTTGAATTGTTTTAG 2613 43.09 MSSISGTCEIVEAREEINPVQNKVGSRQPSFVSNDKDRKLPPLKIGFKGSLEDDINQLFEAINLKNSFKSSGHSQVDASPSRKSALKKPISVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAAIKRSSKSASSSRLSEAGRIKTLYDSVLVEATQPGSSADNGKGSVVEISLVPEEKNVNSEKSLKHVQEPAIKSLAKSSHSSLHLPVLKTQNCGEISVVQNEDATLSRKVRSQTLKAELEKEDESIPSPSISSNTIRGVLEKDKKVLASSKVANKASTPKPGRKGRLQTASSSKLGNGHKISKLSRSTSRSVKPVIRNKGLAKKKVKQDLSSSTCTSSTYNVVNGELDPSGRQLICERCHCALNGATKESKKGSVASQSTSLSIDVNMTNSKSGGNKLGITMDSKASDIRVKRNTRIRDKGEFSQSSKSSQGEYSSSTTSISDDSNGHGSGNCSNRPHMSKDVRWEAIRHAQMQHGILSLRHFNLLKKLGCGDIGTVYLAELTGTSCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNAESARTSGPCTDSSCVEPFCIQPSCQVPCFSPRFLPAAAKTRKLKPDLATQVKSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQSLSFPDSPFVGFQARDLIRGLLVKEPENRFGSEKGAAEIKQHPFFEGLNWALIRCAIPPELPEFCDMDIPSMIAQQNKFRYLESKSTGEHLEFELF 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3243154 3246753 + evm.model.ptg000007l.508 HCH9g0508 551140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0508 870 Gene3D Transferase(Phosphotransferase) domain 1 566 635 - -
HCH9g0508 870 ProSiteProfiles Protein kinase domain profile. 486 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0508 870 CDD STKc_phototropin_like 484 837 - -
HCH9g0508 870 Pfam Protein kinase domain 716 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0508 870 Pfam Protein kinase domain 487 637 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0508 870 SMART serkin_6 486 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0508 870 PANTHER FLIPPASE KINASE 1-RELATED 305 844 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH9g0508 870 MobiDBLite consensus disorder prediction 409 426 - -
HCH9g0508 870 MobiDBLite consensus disorder prediction 427 460 - -
HCH9g0508 870 SUPERFAMILY Protein kinase-like (PK-like) 458 837 IPR011009 -
HCH9g0508 870 MobiDBLite consensus disorder prediction 69 106 - -
HCH9g0508 870 MobiDBLite consensus disorder prediction 273 316 - -
HCH9g0508 870 FunFam serine/threonine-protein kinase D6PK-like 714 837 - -
HCH9g0508 870 FunFam Serine/threonine-protein kinase D6PK-like 484 569 - -
HCH9g0508 870 FunFam serine/threonine-protein kinase D6PK-like 570 637 - -
HCH9g0508 870 MobiDBLite consensus disorder prediction 389 461 - -
HCH9g0508 870 MobiDBLite consensus disorder prediction 287 316 - -
HCH9g0508 870 Gene3D Transferase(Phosphotransferase) domain 1 712 836 - -
HCH9g0508 870 MobiDBLite consensus disorder prediction 389 403 - -
HCH9g0508 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0508 870 Gene3D Phosphorylase Kinase; domain 1 484 565 - -
HCH9g0508 870 MobiDBLite consensus disorder prediction 240 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1391 HCH-Chr2:55685336 HCH9g0508 HCH-Chr9:3243154 5.20E-62 dispersed
HCH8g1345 HCH-Chr8:48336948 HCH9g0508 HCH-Chr9:3243154 2.80E-43 dispersed
HCH9g0115 HCH-Chr9:603573 HCH9g0508 HCH-Chr9:3243154 1.50E-146 dispersed
HCH9g0508 HCH-Chr9:3243154 HCH3g0713 HCH-Chr3:5105713 2.50E-21 dispersed
HCH2g1251 HCH-Chr2:54821396 HCH9g0508 HCH-Chr9:3243154 1.40E-194 wgd
HCH3g1038 HCH-Chr3:14475731 HCH9g0508 HCH-Chr9:3243154 8.90E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81754 PF00069 Pkinase 1.20E-35 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0508 - - - 0.0