Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0513 ATGTATTATTCCAACAGCACCAACAATGGAAACTGGGCTACTGCCACAAATACTTCTGCCAGCCGCCACGGTCGTTACCGAGGAGTGAGGCGTAGGAGCTCCGGCAAATGGGTGTCGGAGATTCGAGAGCCGAGAAAACCTAATAGAATTTGGTTGGGAACATTCCCTACACCTGAAATGGCGGCTGTCGCTTATGATGTGGCAGCGCTGGCTTTGAAGGGTCCGAATGCCGAGCTTAATTTTCCGAATTCGGCGTCTTCATTGCCGGTGCCGGATACCACCTCCCCACGTGATATTCAGGCTGCAGCAGCCTCTGCGGCGGCAGCGATAGGGGCAGCGGCTGCAGCTATGGGAATGGGGCTGATGAAGGATGATGACGATGATAATTTAATGAGCAATGATGGGGTTAGGGCTGGAACATCAGAAGTAAATGAAGAAGGATTTGTTGATGAAGATTTGATCTTTGATATGCCTAATATTTTGATGAATATGGCAGAAGGAATGCTTCTTAGCCCTCCTCGATTCAATAATATCGGCGGCGATTACGCTTCGAGCTATTATACGGAAGATACCGGCCTTTGGAAATTCCCTTAA 594 48.99 MYYSNSTNNGNWATATNTSASRHGRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAVAYDVAALALKGPNAELNFPNSASSLPVPDTTSPRDIQAAAASAAAAIGAAAAAMGMGLMKDDDDDNLMSNDGVRAGTSEVNEEGFVDEDLIFDMPNILMNMAEGMLLSPPRFNNIGGDYASSYYTEDTGLWKFP 197
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 3295237 3295830 - evm.model.ptg000007l.513 HCH9g0513 551145
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0513 197 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0513 197 MobiDBLite consensus disorder prediction 1 32 - -
HCH9g0513 197 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0513 197 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0513 197 MobiDBLite consensus disorder prediction 1 23 - -
HCH9g0513 197 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0513 197 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0513 197 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677(InterPro)
HCH9g0513 197 CDD AP2 25 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0513 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 195 IPR045277 GO:0003700(InterPro)
HCH9g0513 197 FunFam Ethylene-responsive transcription factor 2 25 83 - -
HCH9g0513 197 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1189 HCH-Chr11:44189533 HCH9g0513 HCH-Chr9:3295237 6.20E-28 dispersed
HCH5g0471 HCH-Chr5:3190079 HCH9g0513 HCH-Chr9:3295237 1.70E-27 dispersed
HCH5g0774 HCH-Chr5:5862230 HCH9g0513 HCH-Chr9:3295237 1.20E-30 dispersed
HCH6g0933 HCH-Chr6:44141311 HCH9g0513 HCH-Chr9:3295237 4.60E-39 dispersed
HCH8g0715 HCH-Chr8:43891189 HCH9g0513 HCH-Chr9:3295237 9.80E-27 dispersed
HCH9g0513 HCH-Chr9:3295237 HCH2g0969 HCH-Chr2:53023770 1.90E-14 dispersed
HCH11g0383 HCH-Chr11:3637559 HCH9g0513 HCH-Chr9:3295237 2.20E-47 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34146 PF00847 AP2 3.40E-12 CL0081 HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0513 - - - 0.0