Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g0513 | ATGTATTATTCCAACAGCACCAACAATGGAAACTGGGCTACTGCCACAAATACTTCTGCCAGCCGCCACGGTCGTTACCGAGGAGTGAGGCGTAGGAGCTCCGGCAAATGGGTGTCGGAGATTCGAGAGCCGAGAAAACCTAATAGAATTTGGTTGGGAACATTCCCTACACCTGAAATGGCGGCTGTCGCTTATGATGTGGCAGCGCTGGCTTTGAAGGGTCCGAATGCCGAGCTTAATTTTCCGAATTCGGCGTCTTCATTGCCGGTGCCGGATACCACCTCCCCACGTGATATTCAGGCTGCAGCAGCCTCTGCGGCGGCAGCGATAGGGGCAGCGGCTGCAGCTATGGGAATGGGGCTGATGAAGGATGATGACGATGATAATTTAATGAGCAATGATGGGGTTAGGGCTGGAACATCAGAAGTAAATGAAGAAGGATTTGTTGATGAAGATTTGATCTTTGATATGCCTAATATTTTGATGAATATGGCAGAAGGAATGCTTCTTAGCCCTCCTCGATTCAATAATATCGGCGGCGATTACGCTTCGAGCTATTATACGGAAGATACCGGCCTTTGGAAATTCCCTTAA | 594 | 48.99 | MYYSNSTNNGNWATATNTSASRHGRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAVAYDVAALALKGPNAELNFPNSASSLPVPDTTSPRDIQAAAASAAAAIGAAAAAMGMGLMKDDDDDNLMSNDGVRAGTSEVNEEGFVDEDLIFDMPNILMNMAEGMLLSPPRFNNIGGDYASSYYTEDTGLWKFP | 197 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3295237 | 3295830 | - | evm.model.ptg000007l.513 | HCH9g0513 | 551145 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g0513 | 197 | SMART | rav1_2 | 25 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH9g0513 | 197 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| HCH9g0513 | 197 | PRINTS | Ethylene responsive element binding protein signature | 64 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH9g0513 | 197 | PRINTS | Ethylene responsive element binding protein signature | 26 | 37 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH9g0513 | 197 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| HCH9g0513 | 197 | Pfam | AP2 domain | 25 | 74 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH9g0513 | 197 | ProSiteProfiles | AP2/ERF domain profile. | 25 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH9g0513 | 197 | SUPERFAMILY | DNA-binding domain | 25 | 84 | IPR016177 | GO:0003677(InterPro) | |
| HCH9g0513 | 197 | CDD | AP2 | 25 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH9g0513 | 197 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 12 | 195 | IPR045277 | GO:0003700(InterPro) | |
| HCH9g0513 | 197 | FunFam | Ethylene-responsive transcription factor 2 | 25 | 83 | - | - | |
| HCH9g0513 | 197 | Gene3D | AP2/ERF domain | 24 | 83 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g1189 | HCH-Chr11:44189533 | HCH9g0513 | HCH-Chr9:3295237 | 6.20E-28 | dispersed | |
| HCH5g0471 | HCH-Chr5:3190079 | HCH9g0513 | HCH-Chr9:3295237 | 1.70E-27 | dispersed | |
| HCH5g0774 | HCH-Chr5:5862230 | HCH9g0513 | HCH-Chr9:3295237 | 1.20E-30 | dispersed | |
| HCH6g0933 | HCH-Chr6:44141311 | HCH9g0513 | HCH-Chr9:3295237 | 4.60E-39 | dispersed | |
| HCH8g0715 | HCH-Chr8:43891189 | HCH9g0513 | HCH-Chr9:3295237 | 9.80E-27 | dispersed | |
| HCH9g0513 | HCH-Chr9:3295237 | HCH2g0969 | HCH-Chr2:53023770 | 1.90E-14 | dispersed | |
| HCH11g0383 | HCH-Chr11:3637559 | HCH9g0513 | HCH-Chr9:3295237 | 2.20E-47 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34146 | PF00847 | AP2 | 3.40E-12 | CL0081 | HCH | TF |
Pathway information