Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0516 | ATGGAAATGCCTGGAAGAAGGTCAGATTACACACTTCTAAGTCAAATTCCCGATGACGAAGCTGGAGCCAAAACTCCCGGCGAAGGAAAATTCAATAGAGGAAAAAATGAAATAGGATTTGATTGGAGTGGAAGTAATGATCTAAAGATAAACGCGCAATTGAATCGGATCGGAAATCTGTATTCATCAAATAGCTCACAGAGGCCGCCGTCTAGTGGAAGCAGTTTCGATGAGAGTTCTCAGTCTACGATTTCAAATGGAGTGGAAAATGAGATGAATGGATTGGGATTATATGAATTAAGAGTTAAAGGTGTGGGAAGTGGAGGTTTTTCAGGGAAGAGCTGGGCACAGCAGACGGAAGAGAGTTATCAGTTGCAGTTGGCCTTGGCGCTTAGGCTTTCATCTGAGGCTACGCGTGCCGATGATTCGAATTTCATGGATCCGGTGCCGGACGAGGCGGCGGCTTTACGCTTGGCGGAGAACGTATCACATCGATTTTGGGTAAATGGATGCATATCATATTTTGATAAAGTGCCCGATGGTTTTTACCTAATCCATGGGATGGACCCTTATGTATGGTCTTTGTGCACCAATCTGCAAGAGAATGGCCGCATACCATCAATTGAATCTCTAAAATTAGTTGATTCCAGTATTGATTCTTCAATCGAAATAGCTTTGATAGATCGGCAAAGTGATGCTAGTTTAAAGGAACTACAAAACAGGGTGCATAATATTTCTTCTAGTTGTTTAACCACAAAAGAGGTTGCAGATCATCTAGCAAAGTTGGTGTGCAATCACATGGGGGGGTCAGTTTCAACGGGAGAGGATGATTTGGTTTCCTTTTGGAGGGAATGCAGTGAAGAACTAAAAGAATGCTTGGGGTCTATTGTGATTCCTTTATGCAGCTTATCTGTGGGCTTGTGCAAACATCGTGCTCTCTTATTCAAAGTGCTAGCAGACACAATTGATTTACCCTGTCGAATTGCCAAGGGTTGTAAATATTGTACTAGGGCTGATGCTTCATCCTGCCTTGTTAGACTCGGACTTGACAAGGAGTATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCTGGACTAAAACCTCTTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTACTTCTTGGATAGTCAGTCACTTAATATTGTATTTGATGAAGCTTCTTCAGGAAATGCTGTATCTGGGAAAGATGCTACATTCTCTGCCTATAGTAAGCCATTCAATAGGAAGGGTGTAGAGGGTAAAAACTTAGTGCTTACTGGTGATGGGGATAAAAGTTCTCAGTTATTGAACCGATCAAGTGCTCAGAATAGAAATTCTGAGCATTTAATATCATGTGATACTTCTCATATCATTGTACAGTCTACCCCTTTTGTCAAAGATGTAGTCCCTCTAAACCTGATCTCTCATATTGGTTCCAAAGATTCTCAGCCTTTCTTAGCACTGTCTAATCCAAAGATGGATCCTGCTTGGATTTCATCATTTGTCGAGGGTAATCAACTGGTTAAAAAACCACAGGAGCTTGCCCTTGGTATAGAAGATTTGGTTATTCCCTGGAGTGATCTTGTTTTGAAGGAGAAAATTGGAGCAGGTTCTTTTGGGACTGTACATCATGCTGATTGGCATGGCTCGGATGTTGCTGTAAAGATTCTGATGGAACAAGACTTCCATGCAGAACGTTGTAATGAATTTCTTAGGGAGGTTGCTATAATGAAATGTCTACGACATCCCAACATTGTTCTCTTTATGGGAGCAGTAATTCAGCCTCCCAACTTGTCCATTGTCATGGAATACTTATCAAGAGGTAGCTTGCACAAGCTTTTGCATAGACCTGGGGCAAGAGATATCTTAGACGAGAGGCGTCGGTTGAATATGGCGTACGATGTTGCAAAGGGAATGAATTATCTTCACAGGCGTAACCCTCCCATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTGGTCGACAAAAAGTACACAGTGAAGGTTTGCGATTTTGGTCTTTCACGTTTAAAGGCGAACACATTTCTTTCATCAAAGACAGCTGCTGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAGTCAGATGTTTATAGCTTTGGTATAATTTTGTGGGAGCTTGCTACATTGCAGAAACCATGGAGCAACTTGAACGCAGCACAGGTTGTGGCAGCTGTTGGTTTTAAAGGTAAAAGGCTTGAGATCCCGCGTAATTTAAATCCTCGAGTTGCTACAATCATAGAGGCTTGCTTCTACAGTGAGCCCTGGAAACGTCCATCCTTTTATGAAATAATGGAGTCCTTGAAGCCACTGATTAAGCCCACTATGCCTCAACAAATTCGTTCAGATGTGCCGTAG | 2475 | 42.34 | MEMPGRRSDYTLLSQIPDDEAGAKTPGEGKFNRGKNEIGFDWSGSNDLKINAQLNRIGNLYSSNSSQRPPSSGSSFDESSQSTISNGVENEMNGLGLYELRVKGVGSGGFSGKSWAQQTEESYQLQLALALRLSSEATRADDSNFMDPVPDEAAALRLAENVSHRFWVNGCISYFDKVPDGFYLIHGMDPYVWSLCTNLQENGRIPSIESLKLVDSSIDSSIEIALIDRQSDASLKELQNRVHNISSSCLTTKEVADHLAKLVCNHMGGSVSTGEDDLVSFWRECSEELKECLGSIVIPLCSLSVGLCKHRALLFKVLADTIDLPCRIAKGCKYCTRADASSCLVRLGLDKEYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPGLKPLESTIDFRSLAKQYFLDSQSLNIVFDEASSGNAVSGKDATFSAYSKPFNRKGVEGKNLVLTGDGDKSSQLLNRSSAQNRNSEHLISCDTSHIIVQSTPFVKDVVPLNLISHIGSKDSQPFLALSNPKMDPAWISSFVEGNQLVKKPQELALGIEDLVIPWSDLVLKEKIGAGSFGTVHHADWHGSDVAVKILMEQDFHAERCNEFLREVAIMKCLRHPNIVLFMGAVIQPPNLSIVMEYLSRGSLHKLLHRPGARDILDERRRLNMAYDVAKGMNYLHRRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKTAAGTPEWMAPEVLRDEPSNEKSDVYSFGIILWELATLQKPWSNLNAAQVVAAVGFKGKRLEIPRNLNPRVATIIEACFYSEPWKRPSFYEIMESLKPLIKPTMPQQIRSDVP | 824 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3311571 | 3318621 | - | evm.model.ptg000007l.516 | HCH9g0516 | 551148 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0516 | 824 | FunFam | Serine/threonine-protein kinase CTR1 | 632 | 817 | - | - | |
HCH9g0516 | 824 | CDD | STKc_MAP3K-like | 559 | 807 | - | - | |
HCH9g0516 | 824 | FunFam | Serine/threonine-protein kinase isoform 1 | 544 | 631 | - | - | |
HCH9g0516 | 824 | Gene3D | Transferase(Phosphotransferase) domain 1 | 632 | 822 | - | - | |
HCH9g0516 | 824 | SUPERFAMILY | Protein kinase-like (PK-like) | 534 | 807 | IPR011009 | - | |
HCH9g0516 | 824 | ProSiteProfiles | Protein kinase domain profile. | 553 | 811 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH9g0516 | 824 | Gene3D | Phosphorylase Kinase; domain 1 | 546 | 631 | - | - | |
HCH9g0516 | 824 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 674 | 686 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH9g0516 | 824 | SMART | serkin_6 | 553 | 811 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH9g0516 | 824 | ProSitePatterns | Protein kinases ATP-binding region signature. | 559 | 580 | IPR017441 | GO:0005524(InterPro) | |
HCH9g0516 | 824 | PRINTS | Tyrosine kinase catalytic domain signature | 734 | 756 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH9g0516 | 824 | PRINTS | Tyrosine kinase catalytic domain signature | 627 | 640 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH9g0516 | 824 | PRINTS | Tyrosine kinase catalytic domain signature | 715 | 725 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH9g0516 | 824 | PRINTS | Tyrosine kinase catalytic domain signature | 668 | 686 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH9g0516 | 824 | PRINTS | Tyrosine kinase catalytic domain signature | 778 | 800 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH9g0516 | 824 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
HCH9g0516 | 824 | MobiDBLite | consensus disorder prediction | 61 | 88 | - | - | |
HCH9g0516 | 824 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 159 | 365 | - | - | |
HCH9g0516 | 824 | Pfam | Protein tyrosine and serine/threonine kinase | 554 | 807 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH9g0516 | 824 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 92 | 809 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g0500 | HCH-Chr3:3237128 | HCH9g0516 | HCH-Chr9:3311571 | 1.10E-44 | dispersed | |
HCH8g0166 | HCH-Chr8:6185226 | HCH9g0516 | HCH-Chr9:3311571 | 1.60E-122 | dispersed | |
HCH8g0902 | HCH-Chr8:45359442 | HCH9g0516 | HCH-Chr9:3311571 | 6.40E-46 | dispersed | |
HCH8g1378 | HCH-Chr8:48511990 | HCH9g0516 | HCH-Chr9:3311571 | 2.10E-41 | dispersed | |
HCH9g0151 | HCH-Chr9:875802 | HCH9g0516 | HCH-Chr9:3311571 | 7.10E-42 | dispersed | |
HCH9g0516 | HCH-Chr9:3311571 | HCH4g1273 | HCH-Chr4:8778717 | 6.60E-32 | dispersed | |
HCH12g0507 | HCH-Chr12:2986428 | HCH9g0516 | HCH-Chr9:3311571 | 3.60E-114 | transposed | |
HCH12g0705 | HCH-Chr12:4322882 | HCH9g0516 | HCH-Chr9:3311571 | 5.20E-174 | transposed | |
HCH11g0373 | HCH-Chr11:3504491 | HCH9g0516 | HCH-Chr9:3311571 | 1.40E-297 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81755 | PF07714 | PK_Tyr_Ser-Thr | 1.20E-68 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0516 | K14510 | - | csv:101208800 | 1258.43 |