Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0516 ATGGAAATGCCTGGAAGAAGGTCAGATTACACACTTCTAAGTCAAATTCCCGATGACGAAGCTGGAGCCAAAACTCCCGGCGAAGGAAAATTCAATAGAGGAAAAAATGAAATAGGATTTGATTGGAGTGGAAGTAATGATCTAAAGATAAACGCGCAATTGAATCGGATCGGAAATCTGTATTCATCAAATAGCTCACAGAGGCCGCCGTCTAGTGGAAGCAGTTTCGATGAGAGTTCTCAGTCTACGATTTCAAATGGAGTGGAAAATGAGATGAATGGATTGGGATTATATGAATTAAGAGTTAAAGGTGTGGGAAGTGGAGGTTTTTCAGGGAAGAGCTGGGCACAGCAGACGGAAGAGAGTTATCAGTTGCAGTTGGCCTTGGCGCTTAGGCTTTCATCTGAGGCTACGCGTGCCGATGATTCGAATTTCATGGATCCGGTGCCGGACGAGGCGGCGGCTTTACGCTTGGCGGAGAACGTATCACATCGATTTTGGGTAAATGGATGCATATCATATTTTGATAAAGTGCCCGATGGTTTTTACCTAATCCATGGGATGGACCCTTATGTATGGTCTTTGTGCACCAATCTGCAAGAGAATGGCCGCATACCATCAATTGAATCTCTAAAATTAGTTGATTCCAGTATTGATTCTTCAATCGAAATAGCTTTGATAGATCGGCAAAGTGATGCTAGTTTAAAGGAACTACAAAACAGGGTGCATAATATTTCTTCTAGTTGTTTAACCACAAAAGAGGTTGCAGATCATCTAGCAAAGTTGGTGTGCAATCACATGGGGGGGTCAGTTTCAACGGGAGAGGATGATTTGGTTTCCTTTTGGAGGGAATGCAGTGAAGAACTAAAAGAATGCTTGGGGTCTATTGTGATTCCTTTATGCAGCTTATCTGTGGGCTTGTGCAAACATCGTGCTCTCTTATTCAAAGTGCTAGCAGACACAATTGATTTACCCTGTCGAATTGCCAAGGGTTGTAAATATTGTACTAGGGCTGATGCTTCATCCTGCCTTGTTAGACTCGGACTTGACAAGGAGTATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCTGGACTAAAACCTCTTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTACTTCTTGGATAGTCAGTCACTTAATATTGTATTTGATGAAGCTTCTTCAGGAAATGCTGTATCTGGGAAAGATGCTACATTCTCTGCCTATAGTAAGCCATTCAATAGGAAGGGTGTAGAGGGTAAAAACTTAGTGCTTACTGGTGATGGGGATAAAAGTTCTCAGTTATTGAACCGATCAAGTGCTCAGAATAGAAATTCTGAGCATTTAATATCATGTGATACTTCTCATATCATTGTACAGTCTACCCCTTTTGTCAAAGATGTAGTCCCTCTAAACCTGATCTCTCATATTGGTTCCAAAGATTCTCAGCCTTTCTTAGCACTGTCTAATCCAAAGATGGATCCTGCTTGGATTTCATCATTTGTCGAGGGTAATCAACTGGTTAAAAAACCACAGGAGCTTGCCCTTGGTATAGAAGATTTGGTTATTCCCTGGAGTGATCTTGTTTTGAAGGAGAAAATTGGAGCAGGTTCTTTTGGGACTGTACATCATGCTGATTGGCATGGCTCGGATGTTGCTGTAAAGATTCTGATGGAACAAGACTTCCATGCAGAACGTTGTAATGAATTTCTTAGGGAGGTTGCTATAATGAAATGTCTACGACATCCCAACATTGTTCTCTTTATGGGAGCAGTAATTCAGCCTCCCAACTTGTCCATTGTCATGGAATACTTATCAAGAGGTAGCTTGCACAAGCTTTTGCATAGACCTGGGGCAAGAGATATCTTAGACGAGAGGCGTCGGTTGAATATGGCGTACGATGTTGCAAAGGGAATGAATTATCTTCACAGGCGTAACCCTCCCATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTGGTCGACAAAAAGTACACAGTGAAGGTTTGCGATTTTGGTCTTTCACGTTTAAAGGCGAACACATTTCTTTCATCAAAGACAGCTGCTGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAGTCAGATGTTTATAGCTTTGGTATAATTTTGTGGGAGCTTGCTACATTGCAGAAACCATGGAGCAACTTGAACGCAGCACAGGTTGTGGCAGCTGTTGGTTTTAAAGGTAAAAGGCTTGAGATCCCGCGTAATTTAAATCCTCGAGTTGCTACAATCATAGAGGCTTGCTTCTACAGTGAGCCCTGGAAACGTCCATCCTTTTATGAAATAATGGAGTCCTTGAAGCCACTGATTAAGCCCACTATGCCTCAACAAATTCGTTCAGATGTGCCGTAG 2475 42.34 MEMPGRRSDYTLLSQIPDDEAGAKTPGEGKFNRGKNEIGFDWSGSNDLKINAQLNRIGNLYSSNSSQRPPSSGSSFDESSQSTISNGVENEMNGLGLYELRVKGVGSGGFSGKSWAQQTEESYQLQLALALRLSSEATRADDSNFMDPVPDEAAALRLAENVSHRFWVNGCISYFDKVPDGFYLIHGMDPYVWSLCTNLQENGRIPSIESLKLVDSSIDSSIEIALIDRQSDASLKELQNRVHNISSSCLTTKEVADHLAKLVCNHMGGSVSTGEDDLVSFWRECSEELKECLGSIVIPLCSLSVGLCKHRALLFKVLADTIDLPCRIAKGCKYCTRADASSCLVRLGLDKEYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPGLKPLESTIDFRSLAKQYFLDSQSLNIVFDEASSGNAVSGKDATFSAYSKPFNRKGVEGKNLVLTGDGDKSSQLLNRSSAQNRNSEHLISCDTSHIIVQSTPFVKDVVPLNLISHIGSKDSQPFLALSNPKMDPAWISSFVEGNQLVKKPQELALGIEDLVIPWSDLVLKEKIGAGSFGTVHHADWHGSDVAVKILMEQDFHAERCNEFLREVAIMKCLRHPNIVLFMGAVIQPPNLSIVMEYLSRGSLHKLLHRPGARDILDERRRLNMAYDVAKGMNYLHRRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKTAAGTPEWMAPEVLRDEPSNEKSDVYSFGIILWELATLQKPWSNLNAAQVVAAVGFKGKRLEIPRNLNPRVATIIEACFYSEPWKRPSFYEIMESLKPLIKPTMPQQIRSDVP 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3311571 3318621 - evm.model.ptg000007l.516 HCH9g0516 551148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0516 824 FunFam Serine/threonine-protein kinase CTR1 632 817 - -
HCH9g0516 824 CDD STKc_MAP3K-like 559 807 - -
HCH9g0516 824 FunFam Serine/threonine-protein kinase isoform 1 544 631 - -
HCH9g0516 824 Gene3D Transferase(Phosphotransferase) domain 1 632 822 - -
HCH9g0516 824 SUPERFAMILY Protein kinase-like (PK-like) 534 807 IPR011009 -
HCH9g0516 824 ProSiteProfiles Protein kinase domain profile. 553 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0516 824 Gene3D Phosphorylase Kinase; domain 1 546 631 - -
HCH9g0516 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 674 686 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0516 824 SMART serkin_6 553 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0516 824 ProSitePatterns Protein kinases ATP-binding region signature. 559 580 IPR017441 GO:0005524(InterPro)
HCH9g0516 824 PRINTS Tyrosine kinase catalytic domain signature 734 756 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0516 824 PRINTS Tyrosine kinase catalytic domain signature 627 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0516 824 PRINTS Tyrosine kinase catalytic domain signature 715 725 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0516 824 PRINTS Tyrosine kinase catalytic domain signature 668 686 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0516 824 PRINTS Tyrosine kinase catalytic domain signature 778 800 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0516 824 MobiDBLite consensus disorder prediction 1 36 - -
HCH9g0516 824 MobiDBLite consensus disorder prediction 61 88 - -
HCH9g0516 824 Pfam Ethylene-responsive protein kinase Le-CTR1 159 365 - -
HCH9g0516 824 Pfam Protein tyrosine and serine/threonine kinase 554 807 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0516 824 PANTHER SERINE-THREONINE PROTEIN KINASE 92 809 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0500 HCH-Chr3:3237128 HCH9g0516 HCH-Chr9:3311571 1.10E-44 dispersed
HCH8g0166 HCH-Chr8:6185226 HCH9g0516 HCH-Chr9:3311571 1.60E-122 dispersed
HCH8g0902 HCH-Chr8:45359442 HCH9g0516 HCH-Chr9:3311571 6.40E-46 dispersed
HCH8g1378 HCH-Chr8:48511990 HCH9g0516 HCH-Chr9:3311571 2.10E-41 dispersed
HCH9g0151 HCH-Chr9:875802 HCH9g0516 HCH-Chr9:3311571 7.10E-42 dispersed
HCH9g0516 HCH-Chr9:3311571 HCH4g1273 HCH-Chr4:8778717 6.60E-32 dispersed
HCH12g0507 HCH-Chr12:2986428 HCH9g0516 HCH-Chr9:3311571 3.60E-114 transposed
HCH12g0705 HCH-Chr12:4322882 HCH9g0516 HCH-Chr9:3311571 5.20E-174 transposed
HCH11g0373 HCH-Chr11:3504491 HCH9g0516 HCH-Chr9:3311571 1.40E-297 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81755 PF07714 PK_Tyr_Ser-Thr 1.20E-68 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0516 K14510 - csv:101208800 1258.43