Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0523 ATGGAGGAAAAATTAGAAAGCACACATTCCGGGTCTCTAGGAAACTCCGATAGCGGCTCACCGCCGCAAGTAATGGTCGGAGATAGAAGCTTCGGAGCGGCGTTGACGACGGCGGCGACGACGATATCAACAACGTCAGGAAGTGGAGATTTTGTCGAGAAAAAGAAGAGAGGGAGGCCGAGAAAATATGACTCGGAAGGAAATCTAAGACAGAAGCCAATGACTTCACCCACAACTGGATTCTCTCTTTCTCCGTGTGATTTTTCTTCTTCTAAACGAGGAAGAGGAAGGCCTTCTGGTTTTGGTAATTTCCAGCTTCTTGGTTCTTTTGGTGAAGCATTTGCTAATACGGCCGTCGGCGATTTCACACCACACGTCGTAACCGTCAACGCCGGCGAGGACGTGGTAGAAAAAATAATGTGTTTTTCGCAAAAGGGTCCTCGAGGAATTTGCGTTCTCTCTGCGAATGGAGCTGTTTCCAATGTTACTATTCGCCAGCCAGGTTCTTCTGGTGGTATTCTGACATACGAGGGCCGGTTTGAAATACTATCATTATCAGGATCATATACAGTCACAGAAACTGCTGGAGTGAGAAGCAGAACTGGTGGTTTAAGCATCTCCTTGGCCGGCCCCGATGGCCGTGTCATCGGCGGCGGTCTCGCGGGTTTGTTGACGGCTGCTGCTCCTATCCAAATTGTAGTTGGAAGTTTCATGATAAATGGATATAAGGCACATAAAAAGAAACATGGGGTGGTTCCCTCCCCAGTTGCAGTTCCTTCAAATACATTAACAGCAGCAACACCTATCTCCATCTCCCAGGCGAGGTCCGACACTGATAACTCCTTAATAGCTTCGCCGTCGCCACTACCCGGACCGGACAATGTAGAAGCCGAAAGCGGCACAGTGGAGAGGCAGAATCTAAATTTTCCAAACCAGAATGCAGCTGCAGCATGGAATGGAAATGAGGCAACCCCCATTCCGAGGCCATCTCCAGACATCAATGTATCGGTATCTTGTGGCGAATAG 1026 48.83 MEEKLESTHSGSLGNSDSGSPPQVMVGDRSFGAALTTAATTISTTSGSGDFVEKKKRGRPRKYDSEGNLRQKPMTSPTTGFSLSPCDFSSSKRGRGRPSGFGNFQLLGSFGEAFANTAVGDFTPHVVTVNAGEDVVEKIMCFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSYTVTETAGVRSRTGGLSISLAGPDGRVIGGGLAGLLTAAAPIQIVVGSFMINGYKAHKKKHGVVPSPVAVPSNTLTAATPISISQARSDTDNSLIASPSPLPGPDNVEAESGTVERQNLNFPNQNAAAAWNGNEATPIPRPSPDINVSVSCGE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3379024 3381275 + evm.model.ptg000007l.523 HCH9g0523 551155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0523 341 ProSiteProfiles PPC domain profile profile. 119 266 IPR005175 -
HCH9g0523 341 SMART AT_hook_2 54 66 IPR017956 GO:0003677(InterPro)
HCH9g0523 341 SMART AT_hook_2 92 104 IPR017956 GO:0003677(InterPro)
HCH9g0523 341 MobiDBLite consensus disorder prediction 69 89 - -
HCH9g0523 341 CDD DUF296 123 237 IPR005175 -
HCH9g0523 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 120 238 - -
HCH9g0523 341 MobiDBLite consensus disorder prediction 50 68 - -
HCH9g0523 341 MobiDBLite consensus disorder prediction 274 341 - -
HCH9g0523 341 MobiDBLite consensus disorder prediction 34 49 - -
HCH9g0523 341 Gene3D - 124 252 - -
HCH9g0523 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 278 IPR039605 GO:0003680(InterPro)
HCH9g0523 341 MobiDBLite consensus disorder prediction 1 94 - -
HCH9g0523 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 237 IPR005175 -
HCH9g0523 341 MobiDBLite consensus disorder prediction 8 23 - -
HCH9g0523 341 MobiDBLite consensus disorder prediction 299 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1108 HCH-Chr6:45683439 HCH9g0523 HCH-Chr9:3379024 6.10E-46 dispersed
HCH7g1547 HCH-Chr7:47928116 HCH9g0523 HCH-Chr9:3379024 1.30E-53 dispersed
HCH9g0523 HCH-Chr9:3379024 HCH5g0424 HCH-Chr5:2804270 2.10E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0523 - - - 0.0