Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g0539 | ATGCCTTCCATCCTTTCTCTCTCCTCAGTCTCTTCTCTCTCTCATCCTTTCCATAACCGACCATCTCTCCCGCCAAAACCACCACTTCATTTCCTCTCCATCAAATCCTCCATTGACGAAACCAATTCCTCCACCAAGCTTAAAAACTCAACCAACAATGCCAAAACCGGTTCTTGGGTCAGCCCAGATTGGCTTACTTCTCTAACTCGTTACATTACTCTCGGCAAAAACGATGATTCAGGAATTCCCATTGCAAGTGCCAAACTTGATGATGTTTCTGATCTTCTGGGTGGTGCTCTTTTCCTTCCATTATTCAAATGGATGAATGATTATGGACCCATTTATAGGCTTGCAGCTGGTCCTAGAAATTTTGTGGTGGTTAGTGATCCTGCTATTGCTAAACATGTTTTGAGGAATTATGGAAAGTATGCTAAAGGGCTTGTTGCTGAGGTCTCTGAGTTCTTGTTTGGGTCTGGTTTTGCTATTGCTGAAGGCTCTCTTTGGACGGTACGGCGTAGAGCTGTGGTTCCATCTCTTCACAAGAAGTACTTATCGGTTATCGTTGATCGAGTATTCTGTAAATGTGCCATGAGGTTGGTGGAGAAGCTGCAAAAGGATGCATTGAATGATAAACCTGTTAACATGGAGGAAAAGTTTTCTCAACTAACTCTTGATGTTATTGGTCTATCTGTATTCAACTACAGTTTTGATTCTCTCTCTACTGACAGCCCTGTGATTGATGCAGTTTACACTGCTTTGAAAGAGGCAGAGGCTCGTTCTACTGACCTTTTACCATATTGGAAGATTGAAGCTCTGTGTAAGATAATCCCAAGACAGATAAAAGCTGAAAAAGCAGTTACAGTTATCAGGAGAACTGTTGAAGAACTAATTGCAAAGTGTAAAGAAATTGTGGAAGCTGAGGGTGAACGTATTGATGAAGAGGAATATGTGAATGATGCTGATCCGAGCATTCTTCGTTTTCTGCTGGCTAGTAGGGAAGAGGTCTCAAGTGTACAATTACGGGATGATATCTTGTCAATGTTAGTTGCTGGACATGAGACTACTGGTTCTGTTTTGACTTGGACACTGTATCTTTTAAGTAAGGACTCCTCATCATTGATCAAGGCACAAAAGGAAGTTGATAGAGTCTTACAAGGAAGGCCTCCTTCCTATGAAGATACAAAGGAACTTAAATTTTTGACACGTTGTATCCTCGAATCAATTCGTCTCTACCCACATCCCCCTGTTTTGATAAGAAGAGCTCAAGTTGCTGACATACTGCCCGGAAATTACAAGGTTAATCCTGGTCAAGATATCATGATTTCAGTGTATAATATCCATCACTCTTCCCAGGTATGGGAAAGAGCAGAAGAGTTTGTGCCTGAAAGATTTGATTTGGATGGTCCTGTGCCTAATGAAAGTAATACAGATTTCAGATTTATTCCATTCAGCGGGGGCCCCCGAAAGTGTGTCGGTGATCAATTTGCATTGCTAGAAGCTATTGTCGCGCTTGCCGTATTTCTGCAGCACCTGAACTTCGAGCTGGTTCCGAATCAGACGATTGGGATGACTACTGGTGCAACTATACATACAACAAATGGTTTGTACATGAAAATCAGCCAAAGGCAACCGGCCCCGAAATTTGCTTCCTCTGCTTCTTCCAGATTTAGCAAAATCCATGGGAGATGCCAAAAGGAACAAATAAAGAGTTGGTATCATGGGATGTGGGGAAAAGGAGATGCCAATGCCAAAGGCATATCCCTTGGAAGATGCTGA | 1776 | 42.29 | MPSILSLSSVSSLSHPFHNRPSLPPKPPLHFLSIKSSIDETNSSTKLKNSTNNAKTGSWVSPDWLTSLTRYITLGKNDDSGIPIASAKLDDVSDLLGGALFLPLFKWMNDYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGKYAKGLVAEVSEFLFGSGFAIAEGSLWTVRRRAVVPSLHKKYLSVIVDRVFCKCAMRLVEKLQKDALNDKPVNMEEKFSQLTLDVIGLSVFNYSFDSLSTDSPVIDAVYTALKEAEARSTDLLPYWKIEALCKIIPRQIKAEKAVTVIRRTVEELIAKCKEIVEAEGERIDEEEYVNDADPSILRFLLASREEVSSVQLRDDILSMLVAGHETTGSVLTWTLYLLSKDSSSLIKAQKEVDRVLQGRPPSYEDTKELKFLTRCILESIRLYPHPPVLIRRAQVADILPGNYKVNPGQDIMISVYNIHHSSQVWERAEEFVPERFDLDGPVPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAVFLQHLNFELVPNQTIGMTTGATIHTTNGLYMKISQRQPAPKFASSASSRFSKIHGRCQKEQIKSWYHGMWGKGDANAKGISLGRC | 591 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3472918 | 3478311 | + | evm.model.ptg000007l.539 | HCH9g0539 | 551171 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g0539 | 591 | PRINTS | P450 superfamily signature | 350 | 367 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PRINTS | P450 superfamily signature | 490 | 501 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PRINTS | P450 superfamily signature | 402 | 413 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PRINTS | P450 superfamily signature | 481 | 490 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | CDD | CYP97 | 102 | 536 | - | - | |
| HCH9g0539 | 591 | Gene3D | Cytochrome P450 | 83 | 561 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PRINTS | E-class P450 group I signature | 359 | 385 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PRINTS | E-class P450 group I signature | 108 | 127 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PRINTS | E-class P450 group I signature | 442 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PRINTS | E-class P450 group I signature | 490 | 513 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PRINTS | E-class P450 group I signature | 339 | 356 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PRINTS | E-class P450 group I signature | 480 | 490 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 483 | 492 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH9g0539 | 591 | Pfam | Cytochrome P450 | 104 | 525 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH9g0539 | 591 | PANTHER | CYTOCHROME P450 FAMILY 4 | 99 | 540 | IPR050196 | GO:0009507(PANTHER)|GO:0009974(PANTHER)|GO:0016117(PANTHER) | |
| HCH9g0539 | 591 | SUPERFAMILY | Cytochrome P450 | 97 | 542 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0735 | HCH-Chr11:35848243 | HCH9g0539 | HCH-Chr9:3472918 | 2.10E-131 | dispersed | |
| HCH6g1325 | HCH-Chr6:47372815 | HCH9g0539 | HCH-Chr9:3472918 | 9.00E-108 | dispersed | |
| HCH9g0539 | HCH-Chr9:3472918 | HCH9g1269 | HCH-Chr9:37181708 | 9.20E-28 | dispersed | |
| HCH9g0539 | HCH-Chr9:3472918 | HCH9g0365 | HCH-Chr9:2261358 | 1.10E-36 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH9g0539 | K09837 | - | csv:101204961 | 949.118 |