Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0547 ATGGCCATACCTTCATTGCTCTTCCTTGCCATCGTTCTTCTGCCAATTGCCCATGCAAATATTGCATTGAAGCGTACGCATCATAGGCCTCCATTCAAGCCGGGCCCCTGGAAGCACGCTCATGCTACTTTCTATGAAGGCGGCTCGGGAACCTTTGGAGGTGCATGTGGATATGACGACGTAGAAAAGGAAGGTTACGGGATGCAGACGGCGGCGTTGAGCACGGCGCTGTTCAACAACGGGCAGAGTTGCGGCGCATGCTACGAAATCAAATGTACGGACAGCCCTCAGTCGTGTAAACCAGGACAGCCATCGCTGCTGGTAACAGCAACCAATTTTTGCCCACCAAATAATGATCTTCCCAACAACAATGGAGGATGGTGCAATCCACCACTTGAGCATTTCGATATTGCAAAGCCTGTTTTCCTTAACATTGCTGAGTACAAGGCTGGCATTGTCCCTATAACCTATCGCAGGGTTCCATGCAAAAAAGAGGGAGGAATTCGATTCACAATAACGGGGAATCCATATTTCAACCAAGTATTGGTATGGAATGTGGGAGGAGCTGGGGATGTGACAAGTGTAAGAGTAAAGGGTCATAAGAATCTGAAATGGACAACGATGACACGAATGTGGGGTCAAAAGTGGCTCACTGGTGCCATGATGGTCGGTGAATCACTCACCTTCAGAGTTCGAGCCAGCGATGGCAGATTCTCAACTTCATGGCATATCGCTCCCACCAATTGGCAGTACGGTCAGACCTTTGAGGGCAAGAATTTCAAGAAGTAG 789 48.92 MAIPSLLFLAIVLLPIAHANIALKRTHHRPPFKPGPWKHAHATFYEGGSGTFGGACGYDDVEKEGYGMQTAALSTALFNNGQSCGACYEIKCTDSPQSCKPGQPSLLVTATNFCPPNNDLPNNNGGWCNPPLEHFDIAKPVFLNIAEYKAGIVPITYRRVPCKKEGGIRFTITGNPYFNQVLVWNVGGAGDVTSVRVKGHKNLKWTTMTRMWGQKWLTGAMMVGESLTFRVRASDGRFSTSWHIAPTNWQYGQTFEGKNFKK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3578991 3580220 + evm.model.ptg000007l.547 HCH9g0547 551179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0547 262 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
HCH9g0547 262 Pfam Expansin C-terminal domain 168 246 IPR007117 -
HCH9g0547 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
HCH9g0547 262 Pfam Lytic transglycolase 70 157 IPR009009 -
HCH9g0547 262 PANTHER EXPANSIN-A15 7 260 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 CDD DPBB_EXPA_N 36 162 - -
HCH9g0547 262 SMART dpbb_1 70 157 IPR007112 -
HCH9g0547 262 Gene3D - 166 260 IPR036749 -
HCH9g0547 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 PRINTS Expansin signature 214 235 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 PRINTS Expansin signature 92 103 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
HCH9g0547 262 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
HCH9g0547 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
HCH9g0547 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576(InterPro)
HCH9g0547 262 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
HCH9g0547 262 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576(InterPro)
HCH9g0547 262 Gene3D - 21 163 IPR036908 -
HCH9g0547 262 SUPERFAMILY Barwin-like endoglucanases 36 185 IPR036908 -
HCH9g0547 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0547 HCH-Chr9:3578991 HCH9g0677 HCH-Chr9:4503623 4.80E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0547 - - - 0.0