Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0550 ATGCCGATCCGTAACATTGCCATTGGCCGGGCAGGGGAGGCAACGCACCCTGATGCCTTGAAGGCTGGGTTGGCGGAGTTCATTTCCACTTTGATCTTTGTTTTTGCTGGCCAGGGTTCTGGCATAGCATACGGCAAGCTCACTGGCGATGGTCCTGCCTCCCCGGCCGGCCTCATTTCCGCTTCCATTGCTCATGCTTTCGGTCTCTTTGTCGCCGTCGCCGTCGGTGCTAACATCTCCGGTGGCCATGTCAACCCCGCCGTCACCTTTGGAGCTTTCATTGGTGGCAACATTACTCTCCTCCGTGGTCTCGTTTACTGGGTCGCCCAGCTTCTTGGATCCGTCGTCGCTTGCTTGCTCCTTAAGTTCGTCACTGGTTCGCCCACCGGAAGCTTCTCTCTCTCCGCGGGCGTAGGTGAAATAAACGCCTTCGTTTTCGAGATCGTGATGACATTCGGATTAGTGTATACAGTGTACGCGACCGCAGTGGATCCAAAGAAGGGCAGTTTGGGAACAATTGCACCAATCGCAATCGGTTTCATCGTGGGAGCAAACATTTTGGCGGGTGGAGCTTTCACCGGAGCATCCATGAACCCGGCTGTCGCATTCGGACCCTCCGTGGTGAGCTGGTCATGGGACAGCCACTGGGTCTACTGGGCCGGGCCTCTTATTGGAGGTGGGCTTGCTGGGCTCATTTATGAGTTCATTTTCATCTCCAACACCCACGAGCAACTCCCCACCGCAGATTACTGA 753 55.78 MPIRNIAIGRAGEATHPDALKAGLAEFISTLIFVFAGQGSGIAYGKLTGDGPASPAGLISASIAHAFGLFVAVAVGANISGGHVNPAVTFGAFIGGNITLLRGLVYWVAQLLGSVVACLLLKFVTGSPTGSFSLSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDSHWVYWAGPLIGGGLAGLIYEFIFISNTHEQLPTADY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3606065 3607421 + evm.model.ptg000007l.550 HCH9g0550 551182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0550 250 FunFam Probable aquaporin TIP1-1 4 250 - -
HCH9g0550 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0550 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
HCH9g0550 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
HCH9g0550 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0550 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0550 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0550 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0550 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0550 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0550 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0550 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
HCH9g0550 250 SUPERFAMILY Aquaporin-like 14 245 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0252 HCH-Chr3:1613103 HCH9g0550 HCH-Chr9:3606065 5.20E-82 dispersed
HCH4g1415 HCH-Chr4:10392737 HCH9g0550 HCH-Chr9:3606065 2.20E-76 dispersed
HCH5g0367 HCH-Chr5:2387645 HCH9g0550 HCH-Chr9:3606065 4.40E-80 dispersed
HCH5g0726 HCH-Chr5:5267021 HCH9g0550 HCH-Chr9:3606065 7.80E-48 dispersed
HCH9g0550 HCH-Chr9:3606065 HCH9g0592 HCH-Chr9:3986050 2.60E-32 dispersed
HCH3g1317 HCH-Chr3:50693490 HCH9g0550 HCH-Chr9:3606065 2.10E-98 transposed
HCH11g0315 HCH-Chr11:2874028 HCH9g0550 HCH-Chr9:3606065 4.40E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0550 K09873 - csv:101204225 444.506