Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0554 ATGCTGCCCATAACAACCTGCATTCTGCTCATTTTCCTCTCCCAGCTTGGTGCTGCAGCCACTCTCAACTTCACCCTCCCCGGCCAGCATCCGAGCCCCGAATTAGTCGCCGAAGAACTTCATCGGAAAGTGAATGCTTCTATAACGAGAAGGCAATTACTACAAATTTCCAACAAAGATGAATCTTCATGCTATACAGGAAACCCAATTGACGATTGCTGGAAATGTGATCCAAATTGGCCTAGCAACCGGCAGCGCCTTGCCGATTGCGTGATCGGCTTCGGCCAATACGCGCTCGGTGGCAAGAATGGCGAGTACTACATTGTAACCGATGACTCCGACGGCGATCCCGTAAACCCGAAACCGGGAACGTTACGATATGCCGTGATACAAACTCAACCTCTATGGATCGTTTTCCCGGGCAACATGCTCATTAAGCTCTCTCAAGAACTCATTTTCAACAGCTACAAAACTCTAGATGGACGCGGCGCTAACGTCCATATCGTAGGTGGTGGCTGCATTACGTTGCAGTATATTAGTAATATTATCATCCACAATATTCATATCCACCATTGTTATCCATCAGGTAACACGATGGTCCGTTCAAGTCCAACACATTATGGTTATCGAACGAAATCGGATGGGGACGGAATTTCCATTTTCGGTTCTAAAGATATATGGATAGACCATTGCTCCCTCTCGCATTGCAAGGACGGTTTGATTGATGCCGTAATGGGCTCTACCGGAATCACAATTTCAAACAACTATTTCTCCCATCATGATGAGGTTATGCTTCTTGGTCACAGCGATAATTACTCGCCGGATTCCGGGATGCAGGTGACGATAGCATTCAATCACTTCGGAGAGAAGCTAGTGCAGCGGATGCCGAGGTGCCGGCGAGGGTATATTCACGTCGTCAACAATGATTTTACGCAATGGGAAATGTACGCCATCGGCGGCAGTGGGAACCCTACCATTAACAGCCAAGGAAACCGTTACACGGCTCCTTACGATCGTAACGCCAAGGAGGTTACGAAGCGCGTGGAGACGTCGGAATCGGAATGGAGAGGCTGGAATTGGCGCTCGGAGGGAGATATTCTCGTCAACGGCGCATTCTTTGTTACTTCCGGCGAAGGTTTGGAAGTTAAGTATGAGAAAGCTTACAGCGTTGAGCCCAAGTCCGCCGCCATGATTGATATGCTGACTTGGCACGTCGGTCCCCTTGGTGTCGGCGGCAGGGACAACAATTTGGGGAAGTGGAGTAGAGGGCCCAATGGTGAAGGGTTTTCTCTTGGATCAGACATAGAGTACACAGACGACATGTCGGGAACTCTGTCTCCAACATCGACCAACTATCTCTTCTCTCTTCTAATGACATTCTTATGTTGTTATTTTTGTGCATTGGCACTCACCTTCATGCTATGA 1425 48.49 MLPITTCILLIFLSQLGAAATLNFTLPGQHPSPELVAEELHRKVNASITRRQLLQISNKDESSCYTGNPIDDCWKCDPNWPSNRQRLADCVIGFGQYALGGKNGEYYIVTDDSDGDPVNPKPGTLRYAVIQTQPLWIVFPGNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNIIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDNYSPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGEGLEVKYEKAYSVEPKSAAMIDMLTWHVGPLGVGGRDNNLGKWSRGPNGEGFSLGSDIEYTDDMSGTLSPTSTNYLFSLLMTFLCCYFCALALTFML 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3632306 3636296 + evm.model.ptg000007l.554 HCH9g0554 551186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0554 474 FunFam Pectate lyase 67 409 - -
HCH9g0554 474 Pfam Pectate lyase 152 331 IPR002022 -
HCH9g0554 474 SUPERFAMILY Pectin lyase-like 68 409 IPR011050 -
HCH9g0554 474 SMART amb_all 142 339 IPR002022 -
HCH9g0554 474 Gene3D - 67 409 IPR012334 -
HCH9g0554 474 PRINTS Pollen allergen Amb family signature 150 166 IPR018082 -
HCH9g0554 474 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
HCH9g0554 474 PRINTS Pollen allergen Amb family signature 114 139 IPR018082 -
HCH9g0554 474 PRINTS Pollen allergen Amb family signature 358 382 IPR018082 -
HCH9g0554 474 PRINTS Pollen allergen Amb family signature 214 235 IPR018082 -
HCH9g0554 474 PRINTS Pollen allergen Amb family signature 387 410 IPR018082 -
HCH9g0554 474 PRINTS Pollen allergen Amb family signature 90 107 IPR018082 -
HCH9g0554 474 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
HCH9g0554 474 PANTHER PECTATE LYASE 18-RELATED 22 410 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0167 HCH-Chr5:965687 HCH9g0554 HCH-Chr9:3632306 1.90E-147 dispersed
HCH6g1437 HCH-Chr6:48126885 HCH9g0554 HCH-Chr9:3632306 7.10E-147 dispersed
HCH7g1401 HCH-Chr7:46751094 HCH9g0554 HCH-Chr9:3632306 1.50E-147 dispersed
HCH9g0207 HCH-Chr9:1220532 HCH9g0554 HCH-Chr9:3632306 1.60E-117 dispersed
HCH1g0701 HCH-Chr1:55861148 HCH9g0554 HCH-Chr9:3632306 2.30E-181 wgd
HCH13g0367 HCH-Chr13:2441338 HCH9g0554 HCH-Chr9:3632306 3.10E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0554 K01728 - csv:101203012 828.165