Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0578 ATGGCACCGAGCTTCGAGAAAAATGGTACAGCAGTAGAGAGCTTCTGCACCACTGATCCACTTAACTGGGGGGTGGCGGCAGAGGCACTCAAGGGGAGTCATCTTGATGAGGTGAAGCGTATGGTGGAGGAGTATAGGAGGCCTGTTGTGAAGCTTGGAGGAGAGACCCTTACTATTTCTCAAGTGGCAGCCATTGCCACTCGTGATGCTGATGTTATTGTGGAGCTTTCTGAATCCGCGAGAGCAGGCGTGAAGGCTAGTAGTGACTGGGTGATGGAGAGTATGAATAAAGGAACTGATAGTTATGGTGTCACTACTGGATTTGGTGCCACGTCTCATCGAAGAACTAAACAAGGTGGAGCTCTTCAGAAGGAGTTGATTCGATTTTTGAATGCTGGGATATTTGGAAATGGAAGTGAGTCAAGCCATACTCTTCCTCACTCAGCAAGCAGAGCTGCTATGTTGGTGAGAATCAATACTCTCCTCCAAGGCTACTCAGGAATCAGATTCGAGATTCTTGAAGCCATAACTAAACTTCTCAACCATAATATCACTCCATGCTTGCCTCTTCGAGGAACCATTACTGCTTCTGGAGATCTGGTTCCTCTTTCTTACATTGCTGGATTACTAACTGGAAGACCTAATTCCAAAGCCATTGGACCCAATGGTGAAACCCTTGATGCAAAGGAGGCTTTTCAACAAGCTGGTATTCCCTCTGGATTCTTTGAGTTACAGCCCAAGGAAGGTCTTGCTCTTGTCAATGGTACTGCAGTAGGATCGGGATTGGCTTCCATTGTTCTCTTTGAAGCAAATGTTTTGGCTGTTCTGTCAGAGATTTTGTCTGCCATTTTTGCTGAGGTCATGCAAGGCAAGCCTGAATTTACTGATCATTTGACGCATAAGTTGAAGCATCATCCCGGTCAAATTGAAGCAGCTGCAATCATGGAACATATTTTGGATGGAAGCTCTTACATGAAAGCAGCCAAGAAATTGCATGAAATCGACCCCCTCCAAAAGCCAAAACAAGATCGTTATGCTCTTCGAACTTCACCCCAATGGCTAGGTCCATTGATTGAAGTGATTCGATTCTCCACAAAGTCTATTGAGCGGGAGATAAATTCAGTCAACGACAACCCTCTCATTGACGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTTTGGCCATTGCTTCGATTGGAAAGCTCATGTTTGCTCAGTTTTCAGAACTTGTCAATGATTTCTACAACAACGGGTTACCTTCAAATCTCTCTGCGAGTAGAAACCCCAGTCTTGATTATGGATTCAAAGGTACTGAGATTGCTATGGCTTCATATTGCTCTGAGCTCCAATATCTTGCAAACCCAGTTACAAGTCACGTCCAAAGCGCGGAGCAACACAATCAAGATGTCAACTCTCTCGGTTTGATTTCTGCTAGAAAAACAAATGAAGCCATTGACATCCTCAAGCTCATGTCTTCCACATTCTTAGTTGCATTATGTCAAGCAATCGACTTGAGACATTTGGAGGAAAACTTGAAGAGCACAGTCAAGATCACAGTTAGTCAAGTGGCTAAGAAAATTCTCACAACAACATCTAGTGGTGCACTCCACCCATCAAGATTCTGCGAGAAAGATTTACTAAAAGTGGTCGATAGAGAATACACTTTTGCTTACATTGACGATCCATGCCTTGCAACATATCCATTGATGCAGAAACTGAGACAAGTTCTCGTGGAGCATGCACTCACCAACGGTGAAAATGAAAAGAACACAAACACTTCAATCTTTCAAAAGATCAATGCCTTTGAAGAGGAATTAAAGACCGTTTTACCAAAGGAAGTTGAGAACACAAGGTTGGCGTACGAGAGCGGGAACTCAAAGATAGAAAACCAGATTAAAGAGTGCAGATCTTATCCATTATACAGGTTTGTGAGGGAAGAGTTGGGGACTGAATTGGTGACAGGAGAAAGGGTGATATCTCCCGGAGAAGAGTGCGAGAAAGTATTCACGGCTTTATGTCAAGGAAAAATGATTGACTCCATCTTAGAGTGTTTGAAGGAGTGGAATGGTGCTCCAATTCCCATCTGCTAG 2133 43.93 MAPSFEKNGTAVESFCTTDPLNWGVAAEALKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDADVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGSESSHTLPHSASRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGETLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISARKTNEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKITVSQVAKKILTTTSSGALHPSRFCEKDLLKVVDREYTFAYIDDPCLATYPLMQKLRQVLVEHALTNGENEKNTNTSIFQKINAFEEELKTVLPKEVENTRLAYESGNSKIENQIKECRSYPLYRFVREELGTELVTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3815159 3817291 + evm.model.ptg000007l.578 HCH9g0578 551210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0578 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
HCH9g0578 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
HCH9g0578 710 PANTHER HISTIDINE AMMONIA-LYASE 14 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
HCH9g0578 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
HCH9g0578 710 Gene3D - 523 644 IPR023144 -
HCH9g0578 710 FunFam Phenylalanine ammonia-lyase 257 568 - -
HCH9g0578 710 CDD PAL-HAL 55 520 IPR001106 -
HCH9g0578 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
HCH9g0578 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
HCH9g0578 710 Gene3D - 10 256 IPR024083 -
HCH9g0578 710 Pfam Aromatic amino acid lyase 57 526 IPR001106 -
HCH9g0578 710 FunFam Phenylalanine ammonia-lyase 10 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0578 HCH-Chr9:3815159 HCH9g0579 HCH-Chr9:3861421 0.00E+00 tandem
HCH1g0678 HCH-Chr1:55674812 HCH9g0578 HCH-Chr9:3815159 0.00E+00 wgd
HCH2g1191 HCH-Chr2:54417395 HCH9g0578 HCH-Chr9:3815159 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0578 K10775 - csv:101222092 1307.35