Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0579 ATGGCATCCATGGAGCAAAATGGTGCATTGGAGAGCTTTTGCAGTAGCGTTAGTAGGGATCCGTTGAATTGGGGTGTGGCCGCTGAGTCATTAAAGGGAAGTCATTTAGATGAGGTGAAGAAGATGGTGGAGGAGTACCGGAGGCCGGTGGTGAAGCTGGGTGGTGAGACGCTGACTATTTCTCAGGTGGCGGCGATCGCTACCCGTGACACCGATGTCACGGTGGAGCTAGCGGAGTCGTCCAGAGCCGGCGTGAAAGCTAGTAGTGATTGGGTGATGGAAAGTATGAACAAAGGGACTGATAGCTATGGTGTAACTACTGGCTTTGGTGCTACCTCTCATAGGAGAACTAAGGAAGGTGGTGCTCTTCAAAGGGAGCTAATAAGATTCTTGAACGCTGGAATATTTGGTAATGGAACCGAGTCAAGTCATAGTCTTCCTCACTCAGCAAGCAGAGCTGCCATGTTGGTCAGAATCAACACCCTCCTTCAAGGCTACTCCGGCATTAGATTTGAGATTTTGGAAGCCATAACCAAGCTTCTCAACAACAACATCACTCCATGCTTGCCTCTCCGAGGAACCATCACTGCCTCCGGAGATCTTGTTCCTCTTTCTTACATCGCTGGATTACTCACTGGACGACCCAACTCCAAAGCCGTGGGACCAAATGGAGAAACTCTTGATGCCAAGGAAGCTTTCCAACAAGCTGGTATTACTTCTGGGTTCTTTGAGTTGCAGCCGAAGGAAGGTCTCGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAAGCAAATATTTTGGCTGTTTTGTCAGAAATCATTTCTGCCATATTTGCAGAAGTTATGCAAGGAAAGCCTGAGTTCACTGATCATTTGACTCATAAGTTGAAGCATCATCCTGGTCAAATCGAAGCAGCTGCAATCATGGAACATATTTTAGATGGGAGTTCTTATATGAAAACAGCTAAGAAATTGCATGAAACCGATCCTCTCCAAAAGCCTAAGCAAGATCGATATGCTCTTAGAACTTCACCTCAATGGCTTGGCCCATTGATTGAAGTGATTCGATTCTCCACGAAGTCTATTGAGCGGGAGATAAATTCAGTCAACGACAACCCTCTCATTGATGTTTCAAGAAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCCATTGGAGTCTCCATGGACAACACTCGTTTGGCCATTGCCTCGATTGGGAAGCTCATGTTTGCCCAATTTTCTGAACTTGTGAACGATTTCTACAACAATGGCTTGCCTTCAAATCTCTCCGCGAGTAGAAATCCCAGTCTTGATTATGGATTTAAAGGTGCTGAGATCGCTATGGCTTCATATTGCTCTGAGCTCCAATATCTTGCAAACCCAGTTACAACTCACGTCCAAAGCGCCGAGCAACATAATCAAGATGTAAATTCTCTCGGTTTGATTTCTTCTAGAAAAACAGCAGAAGCCATTGATATTTTGAAGCTCATGTCTTCCACATTTTTAGTTGCACTCTGTCAAGCAATTGACTTGAGGCATTTAGAAGAAAATTTGAAGAACACAGTGAAAAACACGGTTAGCCAAGTTGCTAAGAAAGTCCTCACAACAGGTGTTAATGGTGTGCTACACCCATCAAGATTTTGCGAGAAGGATTTGCTCCAAGTTGTTGATAGAGAATATACTTTTGCTTATATTGACGATCCATGCAGTGCCACTTATCCATTAATTCAAAAATTGAGACAAGTTCTAGTGGAACACGCCCTCTCAAATGGCGAAGATGAAAAGAACACAAACACTTCCATTTTCCAAAAGATTGGAGATTTTGAAGATGAATTGAAGGCCGTCCTGTCTAAAGAAGTCGAAAGTTCGAGACAAGCTTACGAGAGCGGAAACTCGACAATTGAAAACCAAATTAAGGAATGCAGATCATATCCAATATACAAGTTCGTGAGAACGGAATTAGGAACCGATTTACTTACAGGAGAGAAGGTGATATCTCCTGGAGAAGTTTGTGAGAAGGTATTCACTGCTTTATGTGAAGGAAAGATGATTGATCCGATTTTAGAATGTTTAAAGGAGTGGAATGGTGCACCCATTCCCATTTGTTAA 2136 43.68 MASMEQNGALESFCSSVSRDPLNWGVAAESLKGSHLDEVKKMVEEYRRPVVKLGGETLTISQVAAIATRDTDVTVELAESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGIFGNGTESSHSLPHSASRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETLDAKEAFQQAGITSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEIISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTGVNGVLHPSRFCEKDLLQVVDREYTFAYIDDPCSATYPLIQKLRQVLVEHALSNGEDEKNTNTSIFQKIGDFEDELKAVLSKEVESSRQAYESGNSTIENQIKECRSYPIYKFVRTELGTDLLTGEKVISPGEVCEKVFTALCEGKMIDPILECLKEWNGAPIPIC 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3861421 3864285 - evm.model.ptg000007l.579 HCH9g0579 551211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0579 711 FunFam Phenylalanine ammonia-lyase 524 645 - -
HCH9g0579 711 FunFam Phenylalanine ammonia-lyase 258 566 - -
HCH9g0579 711 Pfam Aromatic amino acid lyase 58 537 IPR001106 -
HCH9g0579 711 Gene3D - 524 645 IPR023144 -
HCH9g0579 711 SUPERFAMILY L-aspartase-like 20 711 IPR008948 GO:0003824(InterPro)
HCH9g0579 711 Gene3D - 12 257 IPR024083 -
HCH9g0579 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841(InterPro)
HCH9g0579 711 NCBIfam phenylalanine ammonia-lyase 20 701 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
HCH9g0579 711 FunFam Phenylalanine ammonia-lyase 12 257 - -
HCH9g0579 711 CDD PAL-HAL 56 521 IPR001106 -
HCH9g0579 711 Gene3D Fumarase/aspartase (Central domain) 258 706 - -
HCH9g0579 711 PANTHER HISTIDINE AMMONIA-LYASE 17 711 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0678 HCH-Chr1:55674812 HCH9g0579 HCH-Chr9:3861421 0.00E+00 dispersed
HCH2g1191 HCH-Chr2:54417395 HCH9g0579 HCH-Chr9:3861421 0.00E+00 dispersed
HCH9g0578 HCH-Chr9:3815159 HCH9g0579 HCH-Chr9:3861421 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0579 K10775 - csv:101218144 1296.95