Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0582 ATGGCTTCTTGTAGATCAAGATCAGTGAGATTTCGAGACTACGATGAAAACGGAAAATCCAGTACTAGTAGTAGAACGGGTGGCAGAAGAAGTGAATGGGTGAAGTCAAAGCTAGGATTAAAGAGGGAAGAGTTATTTGAGAATTACGAAGTGGTAGATGGGATGATATGGGATCCAATCATGAACAAATGGAACAAGATATTGTTAGTGGCATGTTTGGTTTCACTGTTTGTAGATCCACTGTTTTTCTACTTGCCAGTGGCTAAAGTTGAAGCATGCATTGAAATAAGCAGTGGGGTGGAAGTGGGAGTGACCATGATTAGATCAATGATGGATGCTTTTTATATAACAAAGATGGTGATTAAGTTTAGAAGGGGTTATATTGTGGCTTCTTCTTCTTCTTCTTCCTCTCAGTTTGGGATTTTTGGGAGAGGAGAATTGGTTGATGATCCCTTAAAGATTGCAGCAAATTACCTTTTTAGGGATTTTTGGATGGATTTTGCAGCTGCGTTGCCTCTTCCACAGGTGTTCATATGGGCTGCAATTCCAAACATAAAGGGTTCAAACATGACACCTCTAAGCAATGTTCTTCGTTTGTCAACCATTTTCCAATACCTTTTGAGGCTTTATCTTATATTTCCTCTCTCTTCTCAAATTATTAAGGCCACTGGGCTTCTCATGAAAACAGCTTGGGCTGGAGCTGTCTATAATCTTATGCTCTTTATGTTAGCAAGCCATGTATTGGGGTCGTGTTGGTACCTATTATCCATAGGAAGACAAATCGAATGCTGGAAAAAAGTGTGTGGTCTGGGAAGCTTGGATTGCAAATATGAATATTTTGATTGTGAAGCTGTGAATGACCCAATTAGAGTTGCTTGGTTCAAAGCAAGCAATCTCTCCATTCTTTGTCATCCAACATCTCCTACCAATTTCTTCCATTTCGGAATTTATTCTGATTCACTTACTTTTGGATTATTCCCTTCCACCTTCTTCAATAGGTTCTTCTATTGTTTTTGGTGGGGCTTGAGGAACTTAAGTTCTTTAGGACAAAATCTACTAACAAGTAGTAACGTTGGAGAAATCATTTTCGCCATTATCATTGCCATTGTTGGATTGGTGCTTTTTGCACTTCTTATTGGAAATATGCAAACTTATCTTCAATCCACAACTTTAAGACTTGAAGAATGGAGGGTTATGAGGACTGATACAGAGCAATGGATGCATCATCGCCAGTTACCCTATGAACTCAAGCAAAGCGTCAGAAAATATGACCAATTTAGATGGATTGCTACTCGTGGAGTTGATGAAGAACATATTCTCAAGGGCCTTCCTATGGATCTCCGTCGAGATATCAAACGCCACCTCTGCCTCGATCTCGTTCGTCAAGTACCACTATTCGACGAAATGGACGATAGAATGCTAGACGCAATATGCGAAAGGCTAAGACCTTCGTTATGCACTTCCGACACTTACCTAGTCCGGGAAGGCGATCCGGTGAACGAAATGCTCTTCATAATCCGCGGCCACCTTGATTCCTTCACCACCAACGGCGGCCGAACCGGTTTCTTCAACTCAAGCCGCCTCGGCCCGACCGACTTCTGCGGCGAAGAACTTCTTCCATGGGTTCTTGATCCTCGCCCAAGCATTGTCCTCCCTTCCTCCACTCGCACCGTTAGGGCCATCACTGAGGTTGAGGCTTTCGCTCTCATCGCCGACGACTTGAAGTTTGTCGCCGCGCAATTTCGACGTCTACATAGCAAGCAACTTAGATATACTTTCAGGTTTTACTCTCATCAGTGGCGGACGTGGGCTGCATGCTTCATTCAGGCAGCTTGGTTTAGCTATAAGCGAAGGAAAGAAGCGGCGGAGGTTAAGAGCATGGCGAAGAAGAAGAAGAAGAATACGGGATTAGGGTTACATAAGAAGGAAGAGATTAATAATATTCTTAGCTCCTTGCAGAAGCCTATTGAACCTGATTTCTATGTGGATGTTTGA 1995 42.66 MASCRSRSVRFRDYDENGKSSTSSRTGGRRSEWVKSKLGLKREELFENYEVVDGMIWDPIMNKWNKILLVACLVSLFVDPLFFYLPVAKVEACIEISSGVEVGVTMIRSMMDAFYITKMVIKFRRGYIVASSSSSSSQFGIFGRGELVDDPLKIAANYLFRDFWMDFAAALPLPQVFIWAAIPNIKGSNMTPLSNVLRLSTIFQYLLRLYLIFPLSSQIIKATGLLMKTAWAGAVYNLMLFMLASHVLGSCWYLLSIGRQIECWKKVCGLGSLDCKYEYFDCEAVNDPIRVAWFKASNLSILCHPTSPTNFFHFGIYSDSLTFGLFPSTFFNRFFYCFWWGLRNLSSLGQNLLTSSNVGEIIFAIIIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVMRTDTEQWMHHRQLPYELKQSVRKYDQFRWIATRGVDEEHILKGLPMDLRRDIKRHLCLDLVRQVPLFDEMDDRMLDAICERLRPSLCTSDTYLVREGDPVNEMLFIIRGHLDSFTTNGGRTGFFNSSRLGPTDFCGEELLPWVLDPRPSIVLPSSTRTVRAITEVEAFALIADDLKFVAAQFRRLHSKQLRYTFRFYSHQWRTWAACFIQAAWFSYKRRKEAAEVKSMAKKKKKNTGLGLHKKEEINNILSSLQKPIEPDFYVDV 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3892858 3896907 + evm.model.ptg000007l.582 HCH9g0582 551214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0582 664 SUPERFAMILY Voltage-gated potassium channels 60 387 - -
HCH9g0582 664 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 632 - -
HCH9g0582 664 FunFam Cyclic nucleotide-gated ion channel 1 463 581 - -
HCH9g0582 664 Gene3D Helix hairpin bin 393 456 - -
HCH9g0582 664 ProSiteProfiles cAMP/cGMP binding motif profile. 465 550 IPR000595 -
HCH9g0582 664 CDD CAP_ED 465 596 IPR000595 -
HCH9g0582 664 FunFam Cyclic nucleotide-gated ion channel 1 392 456 - -
HCH9g0582 664 SUPERFAMILY cAMP-binding domain-like 395 588 IPR018490 -
HCH9g0582 664 Pfam Ion transport protein 64 392 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0582 664 Gene3D - 67 389 - -
HCH9g0582 664 Gene3D Jelly Rolls 463 583 IPR014710 -
HCH9g0582 664 SMART cnmp_10 465 596 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1375 HCH-Chr8:48496899 HCH9g0582 HCH-Chr9:3892858 2.40E-184 dispersed
HCH9g0186 HCH-Chr9:1095262 HCH9g0582 HCH-Chr9:3892858 2.20E-172 dispersed
HCH2g1187 HCH-Chr2:54377065 HCH9g0582 HCH-Chr9:3892858 1.10E-237 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0582 K05391 - cit:102621236 841.262