Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0585 ATGATTACTTTTATGGATTCTAAAGAGAAATTGAAGGAGATTGATAAATGTTTAGATCCTCAGTTATGGCATGCCTGTGCTGGAGGAATGGTTCAAATGCCACTTGTGAATGCCAGGGTTTTCTATTTCCCTCAAGGCCATGCTGAGCATGCTTGTGGCCCTGTTGATTTCAGGGGTTGTTCTAAAGTGATTCCCCCTTATACTCTCTGTAGAGTTTCTGCTATCAAGTTCCTTGCCGATCCCGAGACCGATGAGGTCTTTGCCAAACTTGGTTTGATTCCTATTAATGGGAATGAACTTGATTTTGAAGATGATGGAATTGGTGGTAGGCTTAATGGGAATGAACAAGATAAACCAACTTCATTTGCTAAGACATTGACTCAGTCTGATGCTAACAATGGTGGCGGTTTCTCCGTACCGAGGTACTGCGCCGAAACGATCTTCCCTCGGTTGGATTATTCTGCTGATCCCCCTGTGCAGACAATTCTTGCCAAGGATGTTCATGGTGAGACATGGAAATTTAGGCACATTTATAGGGGGACTCCGAGGAGGCATCTCTTGACCACTGGATGGAGTACTTTTGTTAACCACAAGAAGCTTGTTGCGGGTGATTCCATTGTTTTCTTGAGAGCCGAAAACGGAGATCTCTGCGTTGGGATTAGACGGGCCAAGAGGGGAATTGGTGATGGACCTGAGTCTGCATCTGGATGGAATCCTGCAGGGGGGAATTGTGCTGTCCCCTACGGAGCATTTTCGGCATTCTTGAGGGAAGATGAAAACCGACTAACGAGGGCTGCTAATGGTTTGAATGGAAATGGAAGCGTGATGGGAAAAGGGAAAGTGAAGCCTGAATCAGTCATTGAAGCTGCTGCGCTTGCTGCTAATCGGAAGCCCTTTGAAGTCGTTTACTACCCGAGAGCTAGTACGCCTGAGTTCTGTGTCAAGGCGGCACTGGTGAAAGCGGCATTACAGATCCGGTGGTGCTCTGGGATGAGGTTCAAGATGGCCTTCGAAACTGAGGACTCTTCACGGATAAGCTGGTTCATGGGTACCATTAACTCAGTCCAAGTTGCTGATCCACTGCGCTGGCCGGAGTCACCATGGAGGCTTCTACAGGTTACTTGGGATGAACCCGATTTACTTCAGAATGTGAAACGCGTAAGCCCATGGTTGGTTGAATTGGTATCGAACATGTCTCCTATCCACCTATCCCCCTTCTCACCTCCAAGAAAGAAGTTTAGATATCCACAACACCCGGATTTCCCCCTTGATAACCAGCCTTCTTTACCATCATTCTCTAGTTATCTCCATGGGCCAGGCAGCCCCTTCGGTTGTCCACCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTCCATCTCAGTAAACTGCAGTCAGGTCTATTTCCGGTTGGTTATCCTTCACTTGATCCAGCTGCTGTATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAGCCAAGTATGAGTGAAAACGTGTCGTGCTTGTTAACCATGGCACATTCAACACAAGCATCGAAGAAATCCGATGACGTAAAGACTCCCCAGTTAATACTTTTTGGCCGACCTATACTTACTGAATTGCAGATGTCTCAAAGCTGCTCTGGTGATACTGTTTCTCCAGTTGGAACTGGAAATAGTTCTTCAGACGGAAATGGAGATAAAATGGCAAATTTCTCTGATGGCTCTGGATCTGCTCTGCATCAACAAGGCCTACCAGAGCACTCGTCCTGTGAAAGGTACCAATGGTACAAGGACAATCGCCAAGAAGTCGAGCCTAACTTGGACACTGGCCACTGTAAAGTCTTTATGGAATCAGAAGACGTAGGTCGCACCCTCGATCTTTCGTCGCTTGCTTCTTATGAAGAATTGTACAGAAAACTCGGAAATATGTTTGGTATAGATAACTCCGAGACGTTGAACAATGTTTTGTACCGAGATATTTCCGGGGCCGTCAAGCACGTTGGTGATGAGCAATTCAGTGACTTCATCAAGACAGCCAGAAGATTGACAATCCTAACAGATTCAGGAAGTAACAACGTAGGAGCGTAG 2103 46.5 MITFMDSKEKLKEIDKCLDPQLWHACAGGMVQMPLVNARVFYFPQGHAEHACGPVDFRGCSKVIPPYTLCRVSAIKFLADPETDEVFAKLGLIPINGNELDFEDDGIGGRLNGNEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESASGWNPAGGNCAVPYGAFSAFLREDENRLTRAANGLNGNGSVMGKGKVKPESVIEAAALAANRKPFEVVYYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVADPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLSPFSPPRKKFRYPQHPDFPLDNQPSLPSFSSYLHGPGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFPVGYPSLDPAAVSTRLSGNAMTEKPSMSENVSCLLTMAHSTQASKKSDDVKTPQLILFGRPILTELQMSQSCSGDTVSPVGTGNSSSDGNGDKMANFSDGSGSALHQQGLPEHSSCERYQWYKDNRQEVEPNLDTGHCKVFMESEDVGRTLDLSSLASYEELYRKLGNMFGIDNSETLNNVLYRDISGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3937229 3939953 + evm.model.ptg000007l.585 HCH9g0585 551217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0585 700 Gene3D - 612 698 - -
HCH9g0585 700 Gene3D - 326 401 - -
HCH9g0585 700 ProSiteProfiles PB1 domain profile. 614 694 IPR053793 -
HCH9g0585 700 SUPERFAMILY DNA-binding pseudobarrel domain 116 227 IPR015300 -
HCH9g0585 700 FunFam Auxin response factor 120 224 - -
HCH9g0585 700 MobiDBLite consensus disorder prediction 548 588 - -
HCH9g0585 700 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
HCH9g0585 700 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
HCH9g0585 700 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
HCH9g0585 700 FunFam Auxin response factor 327 400 - -
HCH9g0585 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 696 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH9g0585 700 Gene3D - 120 224 IPR015300 -
HCH9g0585 700 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
HCH9g0585 700 Pfam Auxin response factor 289 372 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0194 HCH-Chr4:1155945 HCH9g0585 HCH-Chr9:3937229 9.30E-102 dispersed
HCH8g1520 HCH-Chr8:49320730 HCH9g0585 HCH-Chr9:3937229 7.20E-66 dispersed
HCH13g0395 HCH-Chr13:2702701 HCH9g0585 HCH-Chr9:3937229 1.10E-237 wgd
HCH2g1183 HCH-Chr2:54337450 HCH9g0585 HCH-Chr9:3937229 2.50E-261 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34152 PF02362 B3 1.50E-21 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0585 K14486 - csv:101217039 1312.36