Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0588 ATGACTAAGGATATTGAAGCTGGAGGGCATGGTCGGTTCACCGCCAGTGCCAAGGACTACCAAGACCCGCCTCCGGCACCATTGATCGATGCCGAGGAGTTTATTCAATGGTCATTTTATAGGGCTGTTATTGCTGAATTCATTGCCACGCTCTTGTTCTTGTACATTACTGTTCTGACTGTTATTGGGTATAAGGCTCAGATTGATGCTTCCAATGGCGGTCAGGCTTGTGGTGGTGTTGGCATTTTGGGCATTGCTTGGGCATTTGGTGGCATGATCTTTGTTCTCGTTTATTGCACGGCTGGTATTTCTGGAGGGCATATTAACCCGGCAGTGACATTTGGGCTGTTTTTGGCTAGAAAGGTCTCTTTGGTTAGAGCCATATTCTACATGGCTGCACAATGTTTGGGCGCTATATGTGGCTGTGCTCTTGTGAAATCATTACAAAAGGCTCACTACAATAGCTATGGCGGTGGGGCCAACTCGCTGGCCGATGGATACAGCGTTGGCACTGGCTTAGCTGCGGAGATCATCGGCACCTTCGTTCTCGTTTACACCGTCTTCTCGGCCACCGATCCCAAGAGGAATGCTAGAGATTCCCATGTGCCTGTTCTTGCACCACTGCCGATTGGATTCGCTGTGTTCATGGTTCACTTAGCCACCATTCCGATCACCGGCACGGGTATAAACCCGGCTCGAAGCTTAGGAGCTGCAGTGATCTTTAACAAAGACCAGCCCTGGGATGATCAGTGGATATTCTGGATTGGTCCCTTCATTGGAGCTGCAATTGCTGCAATCTATCATCAAATCATATTGAGGGCAGGAGCAGTGAAAGCTCTGGGATCTTTCAGAAGTTCCTCCATATAA 867 48.9 MTKDIEAGGHGRFTASAKDYQDPPPAPLIDAEEFIQWSFYRAVIAEFIATLLFLYITVLTVIGYKAQIDASNGGQACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIFYMAAQCLGAICGCALVKSLQKAHYNSYGGGANSLADGYSVGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNKDQPWDDQWIFWIGPFIGAAIAAIYHQIILRAGAVKALGSFRSSSI 288
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 3961959 3963157 - evm.model.ptg000007l.588 HCH9g0588 551220
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0588 288 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0588 288 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0588 288 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0588 288 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0588 288 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0588 288 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0588 288 SUPERFAMILY Aquaporin-like 33 273 IPR023271 -
HCH9g0588 288 CDD MIP 41 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0588 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 285 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
HCH9g0588 288 FunFam Probable aquaporin PIP1-2 26 287 - -
HCH9g0588 288 NCBIfam MIP family channel protein 45 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0588 288 ProSitePatterns MIP family signature. 107 115 IPR022357 -
HCH9g0588 288 Gene3D Glycerol uptake facilitator protein. 26 288 IPR023271 -
HCH9g0588 288 Pfam Major intrinsic protein 35 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0521 HCH-Chr5:3561664 HCH9g0588 HCH-Chr9:3961959 1.20E-108 dispersed
HCH9g0413 HCH-Chr9:2596657 HCH9g0588 HCH-Chr9:3961959 8.40E-16 dispersed
HCH9g0588 HCH-Chr9:3961959 HCH9g0590 HCH-Chr9:3974820 1.20E-145 dispersed
HCH9g0588 HCH-Chr9:3961959 HCH9g0589 HCH-Chr9:3964449 3.30E-95 tandem
HCH9g0878 HCH-Chr9:6304665 HCH9g0588 HCH-Chr9:3961959 3.20E-11 transposed
HCH1g0670 HCH-Chr1:55597239 HCH9g0588 HCH-Chr9:3961959 6.70E-130 wgd
HCH11g0278 HCH-Chr11:2515246 HCH9g0588 HCH-Chr9:3961959 1.90E-127 wgd
HCH13g0401 HCH-Chr13:2747532 HCH9g0588 HCH-Chr9:3961959 9.00E-130 wgd
HCH2g1176 HCH-Chr2:54284098 HCH9g0588 HCH-Chr9:3961959 1.00E-128 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0588 K09872 - csv:101215366 506.138