Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0588 | ATGACTAAGGATATTGAAGCTGGAGGGCATGGTCGGTTCACCGCCAGTGCCAAGGACTACCAAGACCCGCCTCCGGCACCATTGATCGATGCCGAGGAGTTTATTCAATGGTCATTTTATAGGGCTGTTATTGCTGAATTCATTGCCACGCTCTTGTTCTTGTACATTACTGTTCTGACTGTTATTGGGTATAAGGCTCAGATTGATGCTTCCAATGGCGGTCAGGCTTGTGGTGGTGTTGGCATTTTGGGCATTGCTTGGGCATTTGGTGGCATGATCTTTGTTCTCGTTTATTGCACGGCTGGTATTTCTGGAGGGCATATTAACCCGGCAGTGACATTTGGGCTGTTTTTGGCTAGAAAGGTCTCTTTGGTTAGAGCCATATTCTACATGGCTGCACAATGTTTGGGCGCTATATGTGGCTGTGCTCTTGTGAAATCATTACAAAAGGCTCACTACAATAGCTATGGCGGTGGGGCCAACTCGCTGGCCGATGGATACAGCGTTGGCACTGGCTTAGCTGCGGAGATCATCGGCACCTTCGTTCTCGTTTACACCGTCTTCTCGGCCACCGATCCCAAGAGGAATGCTAGAGATTCCCATGTGCCTGTTCTTGCACCACTGCCGATTGGATTCGCTGTGTTCATGGTTCACTTAGCCACCATTCCGATCACCGGCACGGGTATAAACCCGGCTCGAAGCTTAGGAGCTGCAGTGATCTTTAACAAAGACCAGCCCTGGGATGATCAGTGGATATTCTGGATTGGTCCCTTCATTGGAGCTGCAATTGCTGCAATCTATCATCAAATCATATTGAGGGCAGGAGCAGTGAAAGCTCTGGGATCTTTCAGAAGTTCCTCCATATAA | 867 | 48.9 | MTKDIEAGGHGRFTASAKDYQDPPPAPLIDAEEFIQWSFYRAVIAEFIATLLFLYITVLTVIGYKAQIDASNGGQACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIFYMAAQCLGAICGCALVKSLQKAHYNSYGGGANSLADGYSVGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNKDQPWDDQWIFWIGPFIGAAIAAIYHQIILRAGAVKALGSFRSSSI | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3961959 | 3963157 | - | evm.model.ptg000007l.588 | HCH9g0588 | 551220 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0588 | 288 | PRINTS | Major intrinsic protein family signature | 251 | 271 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0588 | 288 | PRINTS | Major intrinsic protein family signature | 89 | 113 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0588 | 288 | PRINTS | Major intrinsic protein family signature | 175 | 193 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0588 | 288 | PRINTS | Major intrinsic protein family signature | 211 | 233 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0588 | 288 | PRINTS | Major intrinsic protein family signature | 41 | 60 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0588 | 288 | PRINTS | Major intrinsic protein family signature | 126 | 145 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0588 | 288 | SUPERFAMILY | Aquaporin-like | 33 | 273 | IPR023271 | - | |
HCH9g0588 | 288 | CDD | MIP | 41 | 271 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0588 | 288 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 4 | 285 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
HCH9g0588 | 288 | FunFam | Probable aquaporin PIP1-2 | 26 | 287 | - | - | |
HCH9g0588 | 288 | NCBIfam | MIP family channel protein | 45 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0588 | 288 | ProSitePatterns | MIP family signature. | 107 | 115 | IPR022357 | - | |
HCH9g0588 | 288 | Gene3D | Glycerol uptake facilitator protein. | 26 | 288 | IPR023271 | - | |
HCH9g0588 | 288 | Pfam | Major intrinsic protein | 35 | 268 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0521 | HCH-Chr5:3561664 | HCH9g0588 | HCH-Chr9:3961959 | 1.20E-108 | dispersed | |
HCH9g0413 | HCH-Chr9:2596657 | HCH9g0588 | HCH-Chr9:3961959 | 8.40E-16 | dispersed | |
HCH9g0588 | HCH-Chr9:3961959 | HCH9g0590 | HCH-Chr9:3974820 | 1.20E-145 | dispersed | |
HCH9g0588 | HCH-Chr9:3961959 | HCH9g0589 | HCH-Chr9:3964449 | 3.30E-95 | tandem | |
HCH9g0878 | HCH-Chr9:6304665 | HCH9g0588 | HCH-Chr9:3961959 | 3.20E-11 | transposed | |
HCH1g0670 | HCH-Chr1:55597239 | HCH9g0588 | HCH-Chr9:3961959 | 6.70E-130 | wgd | |
HCH11g0278 | HCH-Chr11:2515246 | HCH9g0588 | HCH-Chr9:3961959 | 1.90E-127 | wgd | |
HCH13g0401 | HCH-Chr13:2747532 | HCH9g0588 | HCH-Chr9:3961959 | 9.00E-130 | wgd | |
HCH2g1176 | HCH-Chr2:54284098 | HCH9g0588 | HCH-Chr9:3961959 | 1.00E-128 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0588 | K09872 | - | csv:101215366 | 506.138 |