Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0589 | ATGGCTGAGTTCATTGCTACGCTTTTGTTCTTGTATATCACTGTTCTCAATGTTACTGGATATAAAAGCACGGGCGGCCAGGCATGCGGCGGCGTCGGCATTCTCGGTATCGCTTGGGCCTTTGGCGGCATGATTTTTATTCTTGTTTACTGCACTGTCGGTATTTCTGGTGGGCATATTAACCCGGCAGTGACATTTGGGCTATTTTTGGCTCGGAAGGTGTCGTTGGTAAGAACCATATTGTACATAGTGGCTCAATGTTTGGGAGCCATTTGTGGTTGTGCCCTAGTAAAATCATTTCAGAAGGGTCTCTATACTCGCTACGGCGGCCGAGCTAACTCGTTGGCTGACGGATACAACACCGGCACCGGCTTAGGAGAGGAGATCATCGGTACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAATGCTAGAGACTCTCATGTCCCTGTTTTGGCGCCACTGCCTAATGGGTTCGCGGTGTTCATGGTTCATTTAGCCACCATTCCCGTCACGGGCACCGGCATAAACCAGGCAAGAAGCTTTGGAGCTGCGGTGGTCTTCAACGAAAAGAAACCCTGGGACGATCAGGTAGATTAA | 615 | 49.92 | MAEFIATLLFLYITVLNVTGYKSTGGQACGGVGILGIAWAFGGMIFILVYCTVGISGGHINPAVTFGLFLARKVSLVRTILYIVAQCLGAICGCALVKSFQKGLYTRYGGRANSLADGYNTGTGLGEEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPNGFAVFMVHLATIPVTGTGINQARSFGAAVVFNEKKPWDDQVD | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3964449 | 3965284 | - | evm.model.ptg000007l.589 | HCH9g0589 | 551221 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0589 | 204 | ProSitePatterns | MIP family signature. | 59 | 67 | IPR022357 | - | |
HCH9g0589 | 204 | Pfam | Major intrinsic protein | 1 | 200 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0589 | 204 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 1 | 202 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
HCH9g0589 | 204 | Gene3D | Glycerol uptake facilitator protein. | 1 | 203 | IPR023271 | - | |
HCH9g0589 | 204 | PRINTS | Major intrinsic protein family signature | 127 | 145 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0589 | 204 | PRINTS | Major intrinsic protein family signature | 41 | 65 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0589 | 204 | PRINTS | Major intrinsic protein family signature | 78 | 97 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0589 | 204 | PRINTS | Major intrinsic protein family signature | 163 | 185 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0589 | 204 | NCBIfam | MIP family channel protein | 2 | 194 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0589 | 204 | CDD | MIP | 2 | 201 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0589 | 204 | SUPERFAMILY | Aquaporin-like | 1 | 194 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH9g0589 | HCH-Chr9:3964449 | HCH9g0592 | HCH-Chr9:3986050 | 2.00E-78 | dispersed | |
HCH9g0588 | HCH-Chr9:3961959 | HCH9g0589 | HCH-Chr9:3964449 | 3.30E-95 | tandem | |
HCH9g0589 | HCH-Chr9:3964449 | HCH9g0590 | HCH-Chr9:3974820 | 1.20E-96 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0589 | K09872 | - | csv:101214884 | 353.599 |