Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0589 ATGGCTGAGTTCATTGCTACGCTTTTGTTCTTGTATATCACTGTTCTCAATGTTACTGGATATAAAAGCACGGGCGGCCAGGCATGCGGCGGCGTCGGCATTCTCGGTATCGCTTGGGCCTTTGGCGGCATGATTTTTATTCTTGTTTACTGCACTGTCGGTATTTCTGGTGGGCATATTAACCCGGCAGTGACATTTGGGCTATTTTTGGCTCGGAAGGTGTCGTTGGTAAGAACCATATTGTACATAGTGGCTCAATGTTTGGGAGCCATTTGTGGTTGTGCCCTAGTAAAATCATTTCAGAAGGGTCTCTATACTCGCTACGGCGGCCGAGCTAACTCGTTGGCTGACGGATACAACACCGGCACCGGCTTAGGAGAGGAGATCATCGGTACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAATGCTAGAGACTCTCATGTCCCTGTTTTGGCGCCACTGCCTAATGGGTTCGCGGTGTTCATGGTTCATTTAGCCACCATTCCCGTCACGGGCACCGGCATAAACCAGGCAAGAAGCTTTGGAGCTGCGGTGGTCTTCAACGAAAAGAAACCCTGGGACGATCAGGTAGATTAA 615 49.92 MAEFIATLLFLYITVLNVTGYKSTGGQACGGVGILGIAWAFGGMIFILVYCTVGISGGHINPAVTFGLFLARKVSLVRTILYIVAQCLGAICGCALVKSFQKGLYTRYGGRANSLADGYNTGTGLGEEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPNGFAVFMVHLATIPVTGTGINQARSFGAAVVFNEKKPWDDQVD 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3964449 3965284 - evm.model.ptg000007l.589 HCH9g0589 551221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0589 204 ProSitePatterns MIP family signature. 59 67 IPR022357 -
HCH9g0589 204 Pfam Major intrinsic protein 1 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0589 204 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 202 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
HCH9g0589 204 Gene3D Glycerol uptake facilitator protein. 1 203 IPR023271 -
HCH9g0589 204 PRINTS Major intrinsic protein family signature 127 145 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0589 204 PRINTS Major intrinsic protein family signature 41 65 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0589 204 PRINTS Major intrinsic protein family signature 78 97 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0589 204 PRINTS Major intrinsic protein family signature 163 185 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0589 204 NCBIfam MIP family channel protein 2 194 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0589 204 CDD MIP 2 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0589 204 SUPERFAMILY Aquaporin-like 1 194 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0589 HCH-Chr9:3964449 HCH9g0592 HCH-Chr9:3986050 2.00E-78 dispersed
HCH9g0588 HCH-Chr9:3961959 HCH9g0589 HCH-Chr9:3964449 3.30E-95 tandem
HCH9g0589 HCH-Chr9:3964449 HCH9g0590 HCH-Chr9:3974820 1.20E-96 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0589 K09872 - csv:101214884 353.599