Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0590 ATGGCAAAAGACACTGAATTTTCAGGTAAGGACTACCAAGACCCGCCTCCGGCACCGTTGATCAATGCCGAGGAGTTTATTCAATGGTCATTTTACAGGGCTGTCATTGCTGAGTTCATTGCCACGCTCTTGTTCTTGTACATTACTGTTCTTACTGTTATTGGGTATAAGGCTCAGATTGATGCTTCCAATGGCGGTCAGGCTTGTGGTGGTGTTGGCATTTTGGGCATTGCTTGGGCATTTGGTGGCATGATCTTTGTTCTTGTTTATTGCACTGCTGGTATTTCTGGAGGGCATATCAATCCAGCAGTGACATTGGGGCTGTTTTTGGCACGTAAAGTATCATTGGTCAGAGCCATATTATACATGGTAGCTCAGTGTTTGGGAGCCATTTGTGGCTGTGCATTGGTCAAATCATTTCAGAAAGCTCACTACAACCGTTACGGCGGTGGAGCCAACACGCTGGCTGATGGCTACAGCACCGGCACGGGGTTGGCGGCGGAGATCATCGGTACCTTTGTTCTTGTTTACACTGTTTTCTCAGCCACCGATCCCAAGAGGAATGCCAGAGATTCCCATGTCCCTGTTCTGGCTCCTCTGCCCATTGGATTCGCTGTGTTTATGGTTCACTTGGCCACTATTCCGATCACCGGCACCGGCATTAACCCTGCTCGAAGCTTTGGAGCTGCAGTGATTTATGGCAGAAGGAAGCCTTGGGATGACCAATGGATATTCTGGGTAGGACCATTCATAGGAGCTGCAATTGCTGCATTTTATCACCAATTCATATTGAGAGCAGGAGCAGTTAAAGCTCTGGGATCATTCAGGAGTTCCCACAGCATCTAA 846 48.11 MAKDTEFSGKDYQDPPPAPLINAEEFIQWSFYRAVIAEFIATLLFLYITVLTVIGYKAQIDASNGGQACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKVSLVRAILYMVAQCLGAICGCALVKSFQKAHYNRYGGGANTLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGRRKPWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSSHSI 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3974820 3976114 + evm.model.ptg000007l.590 HCH9g0590 551222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0590 281 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0590 281 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0590 281 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0590 281 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0590 281 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0590 281 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0590 281 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 277 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
HCH9g0590 281 Gene3D Glycerol uptake facilitator protein. 18 281 IPR023271 -
HCH9g0590 281 ProSitePatterns MIP family signature. 99 107 IPR022357 -
HCH9g0590 281 Pfam Major intrinsic protein 27 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0590 281 SUPERFAMILY Aquaporin-like 25 265 IPR023271 -
HCH9g0590 281 CDD MIP 33 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0590 281 NCBIfam MIP family channel protein 37 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0590 281 FunFam Probable aquaporin PIP1-2 18 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0278 HCH-Chr11:2515246 HCH9g0590 HCH-Chr9:3974820 3.00E-125 dispersed
HCH13g0401 HCH-Chr13:2747532 HCH9g0590 HCH-Chr9:3974820 3.00E-133 dispersed
HCH1g0670 HCH-Chr1:55597239 HCH9g0590 HCH-Chr9:3974820 1.80E-130 dispersed
HCH2g1176 HCH-Chr2:54284098 HCH9g0590 HCH-Chr9:3974820 6.90E-130 dispersed
HCH7g0462 HCH-Chr7:3447180 HCH9g0590 HCH-Chr9:3974820 1.10E-116 dispersed
HCH9g0588 HCH-Chr9:3961959 HCH9g0590 HCH-Chr9:3974820 1.20E-145 dispersed
HCH9g0590 HCH-Chr9:3974820 HCH9g0878 HCH-Chr9:6304665 1.10E-13 dispersed
HCH9g0590 HCH-Chr9:3974820 HCH9g0592 HCH-Chr9:3986050 1.80E-114 proximal
HCH9g0589 HCH-Chr9:3964449 HCH9g0590 HCH-Chr9:3974820 1.20E-96 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0590 K09872 - csv:101215366 508.064