Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0592 ATGTCTGCTGATAATAAGGATATTGAAGCCGGAACCAATGGTGGGTTCACGGTCAGCGATTACCGCGACGAATCCCCGGCTCCGTTCATCGATATCGAGGAGCTTACTCAGTGGTCGTTTTATAGGGCCATTGTTGCTGAGTTTGTTGCCACGCTCTTGCTTTTGTTCGTCGGAGTGCTCACGGTGATCGGTAATAAGACTCAAACTTCTACTTCCGACTGTGGCGGCGGCGGCGTTGGTGTTTTGGGTATTGCTTGGGCGTTTGGTGGCATCGTCTTCATTCTTGTTTACTGTACTGCTGGTATTTCTGGAGGGCATCTTAATCCGGCGGTGACTTTTGGGCTTTTTTTGGCTCGAAAAGTGTCGTTGTTTAGAACCGTAATGTACATGGTGGCTCAATGTTTGGGCGCCATTTTTGGGTGTGCGCTTGTTAAATCATTTCAAAAGGCTCACTTCAATGCCTTCGGCGGCGGAGCCACCGTGCTGGCTGATGGGTACAGCGACCTCACGGGACTAGCCGCCGAGATCTTCGGCACCTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGGAATGCTAGAGATTCCCATGTACCGGTTCTGGCACCACTCCCAATCGGGTTTGCCGTGTTTGTGGTAAATCTAGCTCTCATTCCGATCACGGGAGCCGGTATCAACCCTGCTCGAAGCTTTGGAGCTGCATTGATGTTCAATCAAGAGAAAGCTTGGAATAGTCATTGGATATTCTGGATCGGACCTTTCCTTGGCGCTGCAATGGCTTCAATTTATCATGAATTCATATTGAGAGGAGGAGCATATAAAACCCTGAGATCTTTCCGGAATTCCTTCAAAATTTAA 867 49.13 MSADNKDIEAGTNGGFTVSDYRDESPAPFIDIEELTQWSFYRAIVAEFVATLLLLFVGVLTVIGNKTQTSTSDCGGGGVGVLGIAWAFGGIVFILVYCTAGISGGHLNPAVTFGLFLARKVSLFRTVMYMVAQCLGAIFGCALVKSFQKAHFNAFGGGATVLADGYSDLTGLAAEIFGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVNLALIPITGAGINPARSFGAALMFNQEKAWNSHWIFWIGPFLGAAMASIYHEFILRGGAYKTLRSFRNSFKI 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3986050 3988278 + evm.model.ptg000007l.592 HCH9g0592 551224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0592 288 CDD MIP 42 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0592 288 FunFam Probable aquaporin PIP1-2 27 286 - -
HCH9g0592 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
HCH9g0592 288 Gene3D Glycerol uptake facilitator protein. 27 287 IPR023271 -
HCH9g0592 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
HCH9g0592 288 SUPERFAMILY Aquaporin-like 34 272 IPR023271 -
HCH9g0592 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0592 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0592 288 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0592 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0592 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0592 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0592 288 NCBIfam MIP family channel protein 46 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0592 288 Pfam Major intrinsic protein 34 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0550 HCH-Chr9:3606065 HCH9g0592 HCH-Chr9:3986050 2.60E-32 dispersed
HCH9g0589 HCH-Chr9:3964449 HCH9g0592 HCH-Chr9:3986050 2.00E-78 dispersed
HCH9g0590 HCH-Chr9:3974820 HCH9g0592 HCH-Chr9:3986050 1.80E-114 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0592 K09872 - csv:101215366 422.935