Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0592 | ATGTCTGCTGATAATAAGGATATTGAAGCCGGAACCAATGGTGGGTTCACGGTCAGCGATTACCGCGACGAATCCCCGGCTCCGTTCATCGATATCGAGGAGCTTACTCAGTGGTCGTTTTATAGGGCCATTGTTGCTGAGTTTGTTGCCACGCTCTTGCTTTTGTTCGTCGGAGTGCTCACGGTGATCGGTAATAAGACTCAAACTTCTACTTCCGACTGTGGCGGCGGCGGCGTTGGTGTTTTGGGTATTGCTTGGGCGTTTGGTGGCATCGTCTTCATTCTTGTTTACTGTACTGCTGGTATTTCTGGAGGGCATCTTAATCCGGCGGTGACTTTTGGGCTTTTTTTGGCTCGAAAAGTGTCGTTGTTTAGAACCGTAATGTACATGGTGGCTCAATGTTTGGGCGCCATTTTTGGGTGTGCGCTTGTTAAATCATTTCAAAAGGCTCACTTCAATGCCTTCGGCGGCGGAGCCACCGTGCTGGCTGATGGGTACAGCGACCTCACGGGACTAGCCGCCGAGATCTTCGGCACCTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGGAATGCTAGAGATTCCCATGTACCGGTTCTGGCACCACTCCCAATCGGGTTTGCCGTGTTTGTGGTAAATCTAGCTCTCATTCCGATCACGGGAGCCGGTATCAACCCTGCTCGAAGCTTTGGAGCTGCATTGATGTTCAATCAAGAGAAAGCTTGGAATAGTCATTGGATATTCTGGATCGGACCTTTCCTTGGCGCTGCAATGGCTTCAATTTATCATGAATTCATATTGAGAGGAGGAGCATATAAAACCCTGAGATCTTTCCGGAATTCCTTCAAAATTTAA | 867 | 49.13 | MSADNKDIEAGTNGGFTVSDYRDESPAPFIDIEELTQWSFYRAIVAEFVATLLLLFVGVLTVIGNKTQTSTSDCGGGGVGVLGIAWAFGGIVFILVYCTAGISGGHLNPAVTFGLFLARKVSLFRTVMYMVAQCLGAIFGCALVKSFQKAHFNAFGGGATVLADGYSDLTGLAAEIFGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVNLALIPITGAGINPARSFGAALMFNQEKAWNSHWIFWIGPFLGAAMASIYHEFILRGGAYKTLRSFRNSFKI | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3986050 | 3988278 | + | evm.model.ptg000007l.592 | HCH9g0592 | 551224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0592 | 288 | CDD | MIP | 42 | 270 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0592 | 288 | FunFam | Probable aquaporin PIP1-2 | 27 | 286 | - | - | |
HCH9g0592 | 288 | ProSitePatterns | MIP family signature. | 106 | 114 | IPR022357 | - | |
HCH9g0592 | 288 | Gene3D | Glycerol uptake facilitator protein. | 27 | 287 | IPR023271 | - | |
HCH9g0592 | 288 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 9 | 283 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
HCH9g0592 | 288 | SUPERFAMILY | Aquaporin-like | 34 | 272 | IPR023271 | - | |
HCH9g0592 | 288 | PRINTS | Major intrinsic protein family signature | 88 | 112 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0592 | 288 | PRINTS | Major intrinsic protein family signature | 125 | 144 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0592 | 288 | PRINTS | Major intrinsic protein family signature | 42 | 61 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0592 | 288 | PRINTS | Major intrinsic protein family signature | 210 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0592 | 288 | PRINTS | Major intrinsic protein family signature | 250 | 270 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0592 | 288 | PRINTS | Major intrinsic protein family signature | 174 | 192 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0592 | 288 | NCBIfam | MIP family channel protein | 46 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0592 | 288 | Pfam | Major intrinsic protein | 34 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH9g0550 | HCH-Chr9:3606065 | HCH9g0592 | HCH-Chr9:3986050 | 2.60E-32 | dispersed | |
HCH9g0589 | HCH-Chr9:3964449 | HCH9g0592 | HCH-Chr9:3986050 | 2.00E-78 | dispersed | |
HCH9g0590 | HCH-Chr9:3974820 | HCH9g0592 | HCH-Chr9:3986050 | 1.80E-114 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0592 | K09872 | - | csv:101215366 | 422.935 |