Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0595 ATGAAGGGCAGATTTCTTTTCTTTAGTTGTTGTTCTTCTCCTCAAACTGGATCAGTTTTTGTCAATAGCCATCATGATAGACAAGATAATGAAAATTTTCGTATATATTCTTACAATGAGCTTAAATCAGCAACTAATGGATTTAGTGCTGCGAATAAGATCGGTGAAGGCGGATTTGGCTGTGTTTATAAGGGTCGGCTTCGAGATGGAAGAAGAATTGCGGTGAAAGTGCTTTCGATTGAAGTCGAATCGATGAGAGGAGAGAGGGAGTTTATAGCTGAATTAACTTCACTTTCCAACATTAGACATGAGAATCTTGTGGAGCTTAAAGGGTGTTATGTTGATGGAAGTGTTAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCACATACTCTTATGGGTGTGAAGGAAAATAGAATAAAATTTAGTTGGAAATCCAGGAAGGACATTTCAATTGCAGTAGCTCGTGGGATCGCCTATCTTCATGAGGTGGTTGAGCCGCATATCGTTCATAGAGATATAAAAGCCAGCAATATACTACTTGACCGTGATTTTACACCTAAAGTGGCAGATTTCGGATTAGCAAAGTTGTTGAGGGATAACCTTTCTCATATTAGTACTCGAGTTGCTGGTACAATAGGATATCTTGCTCCAGAATATGCTGTGAGTGGCCATTTGACACGAAAATCAGATGTCTACAGCTTCGGAGTGTTATTGTTGGAGATTGTTAGTGGCAGAGCAATTGTCGATTTCGATTTAGAGCATGGGGAACACCACCTGGTTCAGAAGGCATGGGAAAGTTTCAAGGACAATAGGCTTGTAGAATTGGTAGATCCTGTGCTTGAAATGAACATCCCCAAGGAAGAAGCTTTTCGGTTCTTGAAAATCGGCCTACTCTGCGTGCAAGAAAACACAAGAAAACGACCTCGAATGTCTGTTGTTGTACGCTTGTTGACAAATGAGGCAGACTTCAAAGATGATGATATTTCACAACCTGGACATGTCATTGATTTCATGGACATTAAAATGGGAAAAGGAAATTCATCAAACAGCATTTTCTCTAAGGTTTCACCAACAAACACAAACAGTATGCAGAGCTTTTGA 1113 39.62 MKGRFLFFSCCSSPQTGSVFVNSHHDRQDNENFRIYSYNELKSATNGFSAANKIGEGGFGCVYKGRLRDGRRIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGCYVDGSVRYLVYDYMENNSLAHTLMGVKENRIKFSWKSRKDISIAVARGIAYLHEVVEPHIVHRDIKASNILLDRDFTPKVADFGLAKLLRDNLSHISTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRAIVDFDLEHGEHHLVQKAWESFKDNRLVELVDPVLEMNIPKEEAFRFLKIGLLCVQENTRKRPRMSVVVRLLTNEADFKDDDISQPGHVIDFMDIKMGKGNSSNSIFSKVSPTNTNSMQSF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4001087 4002698 - evm.model.ptg000007l.595 HCH9g0595 551227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0595 370 Pfam Protein kinase domain 50 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0595 370 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 22 358 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
HCH9g0595 370 CDD STKc_IRAK 54 323 - -
HCH9g0595 370 ProSiteProfiles Protein kinase domain profile. 48 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0595 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0595 370 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524(InterPro)
HCH9g0595 370 Gene3D Transferase(Phosphotransferase) domain 1 126 334 - -
HCH9g0595 370 Gene3D Phosphorylase Kinase; domain 1 20 125 - -
HCH9g0595 370 SMART serkin_6 48 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0595 370 FunFam Putative LRR receptor-like serine/threonine-protein kinase 126 333 - -
HCH9g0595 370 SUPERFAMILY Protein kinase-like (PK-like) 31 323 IPR011009 -
HCH9g0595 370 FunFam Serine/threonine-protein kinase receptor 18 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0575 HCH-Chr6:33799439 HCH9g0595 HCH-Chr9:4001087 3.80E-102 dispersed
HCH9g0595 HCH-Chr9:4001087 HCH1g0825 HCH-Chr1:56890772 5.50E-71 dispersed
HCH9g0595 HCH-Chr9:4001087 HCH6g0639 HCH-Chr6:38236753 6.90E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81759 PF00069 Pkinase 2.10E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0595 - - - 0.0