Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0599 ATGATGCAGATGATGTCTGATAACGAAGACTTTTCTGTTGGAGGGTTCGCTCCTGAACAAACCTCTCAGTATCTTTCTAACCCTAAACCTAATATTATTCCTGATTCTCTCCCCAAGAAGAAGAGAAACATGCCTGGAAAACCAGATCCAGATGCTGAGGTTATTGCTTTATCTCCCAAATCTCTCATGGCGACAAACCGATTCATCTGTGAAATATGCAATAAAGGGTTCCAAAGAGACCAAAACTTGCAACTTCATAGAAGAGGGCATAATCTTCCATGGAAGTTGAGGCAAAGAACGAACAAAGAGGTTAAAAAGAAGGTGTATATTTGTCCGGAGAAGACATGCGTCCACCACGATCCGTCAAGAGCTCTCGGAGACCTCACCGGAATAAAGAAGCATTTCAGTAGAAAACATGGGGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAAATATGCAGTTCAATCTGACTGGAAAGCTCATTCCAAGACTTGTGGAACTAGAGAGTACAAATGTGATTGTGGAACCCCCTTTTCCAGGAAAGATAGCTTCATAACTCATAGAGCTTTCTGCGATGCCTTGGCTGAGGAAAGTGTGAGGCTGATTTCATCATCAATCACAGCAGCAAATTCAAAGCCTAATTCCACTGTAAATGCCATGAACGAGACAAAGACAACTCTAAAGAAGAATATTCATTCCCATCACTTTTCTCTTCCCAATAATACCCTTTACCATTCTCAAGGAATTCCTCAACTCAGTCATGGAATATTTGATCTCCAATCAGACCATAACTTTGACCATAATATTCCCTCCAAATCAACCTCTCAAACCCTTCCCTCGAACCATCTCCAAATAAACCCTCACTTCAATCTTCTCCTTCCCCATGACCCAGTTGCCACTTCTAGTTTTCCTTTCACAACCCAAATGGGATCCTCCAATCCCTTCGAAACCTCTAATCGAATTCCGGGTTTCGATAAAAAAGATTCCAAAAGATCACCCAATGAAAAAGTAGGAGGAGGAGGAGGAGGTTCTAATAGCTTATCTTCCATTTTCGAGAAGCCAGTTATGTCGATGTCGATGTCAGCGACTGCGCTGTTGCTGAAAGCGGCTCAGTTAGGCTCCACGAGAAGCAACCCGTCATTCTCCGCTAATAGCGTTGGAGTAATGAGCTCGTCGTCGTCATCTTCTTCTTCTTCTTCACATCAAAGTGGAAGTGAATTGCATAGATTGTTTGAAAGTAGGAAGCAAAGTGAAGCATTCTTATTGCATGGAAAGCTTGATGAGGGATGTAATGGAAGTGATTTGACGAGGGATTTTCTTGGTAGGAGAGGGAGAGAAGGGATTAATATGCATGGAGCTCCAATGGAGATGACTAAGTTTGCTAGTAGCTCTACGAGCATGGATATGGAGTTGAATAGATTCATTGGTCATTGA 1437 42.31 MMQMMSDNEDFSVGGFAPEQTSQYLSNPKPNIIPDSLPKKKRNMPGKPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTPFSRKDSFITHRAFCDALAEESVRLISSSITAANSKPNSTVNAMNETKTTLKKNIHSHHFSLPNNTLYHSQGIPQLSHGIFDLQSDHNFDHNIPSKSTSQTLPSNHLQINPHFNLLLPHDPVATSSFPFTTQMGSSNPFETSNRIPGFDKKDSKRSPNEKVGGGGGGSNSLSSIFEKPVMSMSMSATALLLKAAQLGSTRSNPSFSANSVGVMSSSSSSSSSSSHQSGSELHRLFESRKQSEAFLLHGKLDEGCNGSDLTRDFLGRRGREGINMHGAPMEMTKFASSSTSMDMELNRFIGH 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4017327 4019691 - evm.model.ptg000007l.599 HCH9g0599 551231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0599 478 MobiDBLite consensus disorder prediction 304 320 - -
HCH9g0599 478 Pfam Zinc finger, C2H2 type 68 90 IPR013087 -
HCH9g0599 478 SMART c2h2final6 109 139 IPR013087 -
HCH9g0599 478 SMART c2h2final6 144 164 IPR013087 -
HCH9g0599 478 SMART c2h2final6 68 90 IPR013087 -
HCH9g0599 478 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
HCH9g0599 478 Gene3D Classic Zinc Finger 49 120 - -
HCH9g0599 478 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
HCH9g0599 478 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 456 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH9g0599 478 Gene3D Classic Zinc Finger 122 200 - -
HCH9g0599 478 MobiDBLite consensus disorder prediction 377 407 - -
HCH9g0599 478 FunFam protein indeterminate-domain 12-like 47 115 - -
HCH9g0599 478 MobiDBLite consensus disorder prediction 15 30 - -
HCH9g0599 478 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
HCH9g0599 478 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
HCH9g0599 478 MobiDBLite consensus disorder prediction 377 409 - -
HCH9g0599 478 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 105 139 - -
HCH9g0599 478 MobiDBLite consensus disorder prediction 1 51 - -
HCH9g0599 478 MobiDBLite consensus disorder prediction 304 349 - -
HCH9g0599 478 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 170 208 - -
HCH9g0599 478 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 143 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0131 HCH-Chr1:9617379 HCH9g0599 HCH-Chr9:4017327 5.10E-85 dispersed
HCH2g0698 HCH-Chr2:50767069 HCH9g0599 HCH-Chr9:4017327 5.80E-92 dispersed
HCH6g0106 HCH-Chr6:1325702 HCH9g0599 HCH-Chr9:4017327 2.80E-87 dispersed
HCH7g0854 HCH-Chr7:23632664 HCH9g0599 HCH-Chr9:4017327 3.30E-87 dispersed
HCH8g0110 HCH-Chr8:4749274 HCH9g0599 HCH-Chr9:4017327 3.60E-57 dispersed
HCH8g0112 HCH-Chr8:4797189 HCH9g0599 HCH-Chr9:4017327 1.10E-81 dispersed
HCH14g0555 HCH-Chr14:34492430 HCH9g0599 HCH-Chr9:4017327 2.00E-90 transposed
HCH11g0273 HCH-Chr11:2485642 HCH9g0599 HCH-Chr9:4017327 1.70E-102 wgd
HCH3g1260 HCH-Chr3:47541140 HCH9g0599 HCH-Chr9:4017327 9.60E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34153 PF12171 zf-C2H2_jaz 6.90E-05 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0599 K25870 - gmx:100789331 400.979