Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0600 ATGGGCAACCTTAATATGTCTCTTTGGAGTTCAAGATTTGTCTTTCTTCTATTAACTTTGCTCCTCCTCCTCTTCAATTTTGGGAAGAGCCAAGTCCTCCTTGTAAACTACTACAACCAAAGTTGCCCAAGAGCCGAAGAAATAATCAAAGAAGAAGTTTTGAAATTATACCACAAACATGGAAACACAGCCCACTCATGGCTCAGAAATCTCTTCCATGATTGCATGGTTAATTCATGTGATGCATCTCTTTTGTTGGAGAAAAATAGTAAGAGAGGTGTTGTTTTATCAGAGAAGACATCTCCAAGGAGCTTTGGGTTGAGGAATTTCAAGTATGTTGAAAAAATCAAACAAGCCCTTGAAAATGAATGCCCCAACACTGTTTCTTGTGCTGATATCATTGCTGTCTCTGCCAGAGACGCCATTGCCTTGTTAGGGGGACCAGAAATTGAAATGAAGACAGGAAGAAGAGATAGCAAGGAAAGCTATGGAGGAATAATGGTGGAGGACTCGATCCCAAATCACAATGATTCCCTCTCATTGGTTCTCGATCGCTTTCAATCCATTTCCATTGATGCTGAAGCTACCGTTGCTCTCTTAGGAGCTCACTCGGTGGGTCGGGTACACTGCATGAATATAGTAAACAGGCTATACCCGACAATTGATCCAACTTTGGATCCGGATCAGGCGGAGTACTTGAAACGAAGATGCCCGAACCCAAATCCAGACCCGAAGGCAGTCCAATATGCAAGGAACGATCGTGAAAGCCCAATGGTACTAGATAACAACTACTACAAAAACATATTGGGCCATAAGGTCCTACTTTTAGTGGACCAAGAGTTGGGCTCAAGCCCAATAACTCTTCCTTATGTCCAAAACATGGCCTCCAACAACAGCTATTTCCATGAACAATTTGGTAGGGCTGTCCTTTTGCTGTCGGAAAACAACCCTCTTGGAGATGACCAAGGAGAGATTAGGAAGGATTGTAGATATGTTAATTAG 1002 42.51 MGNLNMSLWSSRFVFLLLTLLLLLFNFGKSQVLLVNYYNQSCPRAEEIIKEEVLKLYHKHGNTAHSWLRNLFHDCMVNSCDASLLLEKNSKRGVVLSEKTSPRSFGLRNFKYVEKIKQALENECPNTVSCADIIAVSARDAIALLGGPEIEMKTGRRDSKESYGGIMVEDSIPNHNDSLSLVLDRFQSISIDAEATVALLGAHSVGRVHCMNIVNRLYPTIDPTLDPDQAEYLKRRCPNPNPDPKAVQYARNDRESPMVLDNNYYKNILGHKVLLLVDQELGSSPITLPYVQNMASNNSYFHEQFGRAVLLLSENNPLGDDQGEIRKDCRYVN 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4028422 4030041 + evm.model.ptg000007l.600 HCH9g0600 551232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0600 333 FunFam Peroxidase 36 179 - -
HCH9g0600 333 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Plant peroxidase signature 194 206 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Plant peroxidase signature 251 266 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Plant peroxidase signature 267 284 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 SUPERFAMILY Heme-dependent peroxidases 33 333 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 Pfam Peroxidase 50 297 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 CDD secretory_peroxidase 33 332 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH9g0600 333 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PRINTS Haem peroxidase superfamily signature 253 268 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 PANTHER - 16 333 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 Gene3D Peroxidase, domain 2 173 312 - -
HCH9g0600 333 ProSiteProfiles Plant heme peroxidase family profile. 32 333 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0600 333 FunFam Peroxidase 173 312 - -
HCH9g0600 333 Gene3D - 36 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0600 HCH-Chr9:4028422 HCH14g0610 HCH-Chr14:34853882 1.80E-52 dispersed
HCH3g0537 HCH-Chr3:3544201 HCH9g0600 HCH-Chr9:4028422 5.40E-102 transposed
HCH11g0270 HCH-Chr11:2451724 HCH9g0600 HCH-Chr9:4028422 1.70E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0600 K00430 - csv:101221151 511.146