Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0608 ATGTTGGATCTTAATCTCTGTATTCTTTCCAATTCCAGCCACGTCATCACCGGAATTCAAATGGAAACTTCCAACTCTTCTTCCCTTATCAACACCCCCGCCGACGAAGACTCTTCTTCCAACGCCGCTGACTCTTTCACTTACTCTTTTAGTATTCTCAACAATAACAATAATAAAAACCAACTCTCCGGTGACCGGGAACTTCTTTTCCCAGTTTCCACTGCCTTTTCAAAGAGACAATGGCCGGTTTTTCAGCCTGTGAAGAAAGGCCGGCGAGGTCCTAAATCACGAAGCTCAGAGTATCGTGGAGTCACGTATTATAGAAGGACTGGAAGATGGGAATCTCATATTTGGGATAATGGGAAGCAGGTTTATTTGGGAGGTTTTGACACTGCCCATTCTGCAGCTAGAGCTTATGATAGAGCTGCTATTAAATTTCGTGGAGTTCAAGCAGATATAAATTTTCATGTTAGTGACTATAATGAAGATATTAAACAGATGAGTAATTTTACCAAGGAAGAGTTTGTGCATATTCTTCGACGACATAGTACCGGGTTTTCGAGAGGGAGCTCTAAATACAGAGGAGTTACATTGCACAAGTGTGGGAGATGGGAAGCTCGCATGGGACAGTTTCTGGGAAAGAAGTATGTGTATCTCGGCCTGTTCGACAGTGAGATAGACGCCGCAAGAGCATATGATAAGGCTGCTATTAAATACAATGGAAGAGAAGCTGTTACCAACTTTGATCAGAGTTCCTATGAGGGAGATATTTCTTTTGAAGCTGGAAATGAAGAAGCTATGCAGAATATTGACTTGAACTTGGGGATTGCTCCTCCTTGTACATCTGATGACCAAAAGGATAATATTAAAGGCTGCGATTCACCTTCTTCATGGGGCTTGAATAACTTGCATACTGAGAGGAGGCTGGGAGTAATGCTTGAAAACCATAACTCTGCATCAGTGAGAGCACAGCCTTATGGCCCCATGTTGACCTCTAGGCACCATTCATGTTTGAGAAGTACTTCCAAGTTCTTTCCTTCCCATAAGGAAAGAGCATTGGAGAAGAGAATGGAAGTTGATTCCTTCTCTAACTGGACATGGCAAATCCAGAGCCCCTACGGTGGAGCGATTACTTCAGTACCCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCAACCGTCATTTCACAGTCGGCAGCTGCTGCTCAGCATCTTCTTCCAGCAGCAGCGGCGACCATCCGCCACCACCACATTTCACCATCTATAGCCAGCAGTAACAATGTGACCCATTTCTACTGCAGAGGCTGA 1311 44.32 MLDLNLCILSNSSHVITGIQMETSNSSSLINTPADEDSSSNAADSFTYSFSILNNNNNKNQLSGDRELLFPVSTAFSKRQWPVFQPVKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWDNGKQVYLGGFDTAHSAARAYDRAAIKFRGVQADINFHVSDYNEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIDAARAYDKAAIKYNGREAVTNFDQSSYEGDISFEAGNEEAMQNIDLNLGIAPPCTSDDQKDNIKGCDSPSSWGLNNLHTERRLGVMLENHNSASVRAQPYGPMLTSRHHSCLRSTSKFFPSHKERALEKRMEVDSFSNWTWQIQSPYGGAITSVPFSTAASSGFPSSTVISQSAAAAQHLLPAAAATIRHHHISPSIASSNNVTHFYCRG 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4070787 4074102 - evm.model.ptg000007l.608 HCH9g0608 551240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0608 436 Gene3D AP2/ERF domain 100 158 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 Gene3D AP2/ERF domain 191 250 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 SUPERFAMILY DNA-binding domain 191 250 IPR016177 GO:0003677(InterPro)
HCH9g0608 436 ProSiteProfiles AP2/ERF domain profile. 100 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 SUPERFAMILY DNA-binding domain 99 158 IPR016177 GO:0003677(InterPro)
HCH9g0608 436 PRINTS Ethylene responsive element binding protein signature 193 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 PRINTS Ethylene responsive element binding protein signature 231 251 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 51 283 - -
HCH9g0608 436 CDD AP2 99 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 ProSiteProfiles AP2/ERF domain profile. 192 249 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 SMART rav1_2 100 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 SMART rav1_2 192 255 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 FunFam AP2-like ethylene-responsive transcription factor 99 158 - -
HCH9g0608 436 Pfam AP2 domain 100 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 Pfam AP2 domain 191 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 CDD AP2 191 251 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0608 436 FunFam AP2-like ethylene-responsive transcription factor 191 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0298 HCH-Chr14:31567071 HCH9g0608 HCH-Chr9:4070787 4.90E-84 dispersed
HCH2g0046 HCH-Chr2:3409429 HCH9g0608 HCH-Chr9:4070787 5.70E-85 dispersed
HCH9g0209 HCH-Chr9:1233045 HCH9g0608 HCH-Chr9:4070787 8.90E-43 dispersed
HCH9g0608 HCH-Chr9:4070787 HCH9g1376 HCH-Chr9:45279327 1.80E-28 dispersed
HCH1g0521 HCH-Chr1:54130940 HCH9g0608 HCH-Chr9:4070787 5.60E-68 wgd
HCH1g0521 HCH-Chr1:54130940 HCH9g0608 HCH-Chr9:4070787 5.60E-68 wgd
HCH11g0244 HCH-Chr11:2206554 HCH9g0608 HCH-Chr9:4070787 2.30E-118 wgd
HCH2g1142 HCH-Chr2:54083671 HCH9g0608 HCH-Chr9:4070787 4.70E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34155 PF00847 AP2 7.60E-10 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0608 K09284 - csv:101211008 486.493