Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0616 ATGAGTGCCGGTGCGGACAGCCACGGAGAATTACTAGAACTAAATCACTGCGTACAGAGTGGGAGTGGAAACATGAAGGATGGAGTAATATGTATGGAACAGAGTCCGGTTGAGGAAAATGAGTTGAGAATTATTGGATTTTCTGGAAATGTGAAAGATGGGCGAAAACCCGCGGTTCAAACTAAGGACATTCTGCAAATACAACAACAGCAGCAGCAAGCTCAAGGAGCTATAGGCTGGGAGAGGTTTCTGCATGTTAGGTCCCTCAAGGTTTTGCTTGTGGAAAATGATGACTCCACTCGTCAACTTGTCACTGCACTGCTTCGAAATTGCAGTTATGAAGTTATTCCGGCCGCTAATGGACTACATGCATGGAAGATGCTAGAAGATCTGACATATCATATAGATATTGTCTTAACAGAAGTAGTCGTGCCTTGTTTGTCTGGCATCGGTCTATTATACAAGATTATGAGTCATAAAACACGAAAGAATATACCTGTGATCATGATGTCTTCTCATGACTCGATGGGTTTGGTCTTTAAGTGTTTGTCAAAGGGCGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAACGAGCTTAAGAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGTAGTGGAAGTGAAAGTGGCACGCAGACCCAAAAATCCATGAAGTCAAAAAGTGTTGAAAAATCAAACAACACTGGCAGCAATGATGAAGAAGACAATGAGAGCATTGGCTTCAACATTGGAGTTGGAAGTGATGACGGGAGTGGCACTCAGAGTTCTTGGACTAAGCAAGCTATAGAAGTTGAAAGCTCTCAACAAGTGTCTGCATCAGCATGGGATAAAAAGCGTGAATGTCCTGATAGTACTTGTGCTCAAGTCGTCCTCTCAAATGCTGATGCATTTGCTAATAATGTCCTTCCTGTTCTGTCAAAGGAGTGCCAGGAGCAAATAAAGCAACTTGAGAATGTTGCTACTGGTAAAGTGGAATTAGGCATGCACAGGATTCTAGATTTACACCTTGAACTCGCAACTGAAACAACCAAATTTGTCAGCAGAAAACAGAAAAATGTGCTTGAGACAGGGTCCAGTGAATTTAATGAGCAGTTTGAGCAGTTCAACACAGGAGATCTTGACCTCAACGCTGAGAGTCCATCTAGCAAGCTTAAGTATGAACATACTGCTGTTACCGGTTTTGCCACCCATCGTATTGATTCTAAGATAGATGTCACTGAGTTTGAGGCACCAAACAAACACTCCAAGATCACGGACATCAAGAAAATTGCAGGTTCAGAAGAATTTCCATCCCTTGAGCTTGGACTAAAAAGGCTTAGAGGAGTTCAAACCACAGGGAAAGCTATTCAAGATGAGCGGAATGTTTTGAGACGTTCAGATTCTTCAGCTTTTTCAAGGTACAATGCTGCCTCAAATTCTAACAAGACCCCAACTGGGAAAGCTGGAAGTAATTCTCCCCCTGTTAATCTTAATGCCTTAGAAGTTACAAATCAAGAGAACATGCAAGACATCCGATCTCATTCAGGTAGCAATCCTCCCAATCAATTCTCAAACGGAGATAGCAATAATATTGACATGGGTTCCACAACTAAGAATGCATTTTCCAAGTCCGTAGTTATTAATAACAAGTCAGCAATGCCATCAACAGTCAACTGTCTGCAACCATCCACAGGATTCCATCCTATTAAAAATGATGGTCTATCTGTTCCCCAGCAAGCTGATAATGTCAATAATATTTCCACTACAACAATGCAAGCTCAATCAAATTGCATGCACGGGGAATCTCAAATTCAGAAACCTTGTCACCCTTATGATCCCACTCATCAGCTTGTCCACAATATTCCACAACAATTTCCATCTGAGCATAATGGTTTTTCATTAAAGAAAACATCTTCAGCTGTCGCACACTGTGGGTCATCCAATGTGTTAAATGGCCCCGTAGAAGGCAATGCAGCAAATTACAGTGTCAATGGGAGCGGCTCGGGGAGTAACCATGGGAGTAATTGGCCAAATGCTGGAGGGATGAATATAGAAAGTGATAGTGGAATGGGTCAGAAAAGTGGAAGTGCAGATGCTAGTGGGAATGACAGTGGAAACAAAGTAGACCAAAGCAAAGTTTCACGAAGGGAAGCTGCCTTGACAAAGTTTCGTCAGAAAAGGAAGGAAAGATGCTTCCGTAAAAAGGTTCGTTATCAAAGCCGAAAGAGATTAGCAGAGCAGAGGCCCCGAGTCAGGGGACAATTTGTGAAGCAAACCATTAGTGAAGACACAAGCAATGCAGGAGACAGCTAG 2328 42.57 MSAGADSHGELLELNHCVQSGSGNMKDGVICMEQSPVEENELRIIGFSGNVKDGRKPAVQTKDILQIQQQQQQAQGAIGWERFLHVRSLKVLLVENDDSTRQLVTALLRNCSYEVIPAANGLHAWKMLEDLTYHIDIVLTEVVVPCLSGIGLLYKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSMKSKSVEKSNNTGSNDEEDNESIGFNIGVGSDDGSGTQSSWTKQAIEVESSQQVSASAWDKKRECPDSTCAQVVLSNADAFANNVLPVLSKECQEQIKQLENVATGKVELGMHRILDLHLELATETTKFVSRKQKNVLETGSSEFNEQFEQFNTGDLDLNAESPSSKLKYEHTAVTGFATHRIDSKIDVTEFEAPNKHSKITDIKKIAGSEEFPSLELGLKRLRGVQTTGKAIQDERNVLRRSDSSAFSRYNAASNSNKTPTGKAGSNSPPVNLNALEVTNQENMQDIRSHSGSNPPNQFSNGDSNNIDMGSTTKNAFSKSVVINNKSAMPSTVNCLQPSTGFHPIKNDGLSVPQQADNVNNISTTTMQAQSNCMHGESQIQKPCHPYDPTHQLVHNIPQQFPSEHNGFSLKKTSSAVAHCGSSNVLNGPVEGNAANYSVNGSGSGSNHGSNWPNAGGMNIESDSGMGQKSGSADASGNDSGNKVDQSKVSRREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVKQTISEDTSNAGDS 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4110505 4117819 + evm.model.ptg000007l.616 HCH9g0616 551248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0616 775 MobiDBLite consensus disorder prediction 472 502 - -
HCH9g0616 775 PANTHER TWO-COMPONENT RESPONSE REGULATOR 76 351 IPR045279 GO:0009736(InterPro)
HCH9g0616 775 MobiDBLite consensus disorder prediction 213 269 - -
HCH9g0616 775 MobiDBLite consensus disorder prediction 515 534 - -
HCH9g0616 775 FunFam Two-component response regulator-like PRR37 89 247 - -
HCH9g0616 775 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160(InterPro)
HCH9g0616 775 MobiDBLite consensus disorder prediction 668 713 - -
HCH9g0616 775 CDD psREC_PRR 91 194 - -
HCH9g0616 775 SMART REC_2 89 204 IPR001789 GO:0000160(InterPro)
HCH9g0616 775 MobiDBLite consensus disorder prediction 731 746 - -
HCH9g0616 775 MobiDBLite consensus disorder prediction 668 775 - -
HCH9g0616 775 SUPERFAMILY CheY-like 87 213 IPR011006 -
HCH9g0616 775 ProSiteProfiles CCT domain profile. 721 763 IPR010402 GO:0005515(InterPro)
HCH9g0616 775 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160(InterPro)
HCH9g0616 775 Gene3D - 88 362 - -
HCH9g0616 775 MobiDBLite consensus disorder prediction 468 502 - -
HCH9g0616 775 MobiDBLite consensus disorder prediction 213 249 - -
HCH9g0616 775 MobiDBLite consensus disorder prediction 714 730 - -
HCH9g0616 775 Pfam CCT motif 721 763 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0080 HCH-Chr3:455789 HCH9g0616 HCH-Chr9:4110505 3.00E-15 dispersed
HCH5g0915 HCH-Chr5:7604631 HCH9g0616 HCH-Chr9:4110505 3.00E-57 dispersed
HCH7g0821 HCH-Chr7:16555480 HCH9g0616 HCH-Chr9:4110505 5.30E-06 dispersed
HCH7g1806 HCH-Chr7:49593367 HCH9g0616 HCH-Chr9:4110505 5.70E-30 dispersed
HCH8g1021 HCH-Chr8:46223759 HCH9g0616 HCH-Chr9:4110505 2.90E-13 dispersed
HCH9g0616 HCH-Chr9:4110505 HCH8g1283 HCH-Chr8:47985896 1.20E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34156 PF00072 Response_reg 3.00E-18 CL0304 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0616 K12129 - csv:101210765 1090.1