Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0631 ATGGGAAACTCCCATGGCCACCGCAAAAATCGTAACCCCTCTCGACCCATTAACGCCAACTCTCCAAAACCGAATTATAAATATGACCCATCAACCCTAGCTTCACAATCTCAAATTCCAATGGCCTCCTCCTTGCCGTACGGTCACGTTGATTCCAGCCTTCGTGCTCTTGCTGCTCAGGCTGAAGGATTTGGTCGCTTTGCTATTGGTGGTCTCCATGGTTCTGTTTATTGTGTCACTAATTTAGAAGATGACGGTCCGGGATCACTTAGGTATGGATGCCGTATGAAAGAGCCCCTTTGGATTATCTTTGAAATTTCCGGCACAATTAATCTGTCTTCTTACCTGAACGTATCGTCTTATAAGACCATAGATGGTCGGGGTCAAAGGATTAAACTTACAGGGAAGGGATTGAGGCTGAAGGAATGTGAACATGTGATTATTTGCAATTTAGAGTTTGAAGGTGGTAGAGGTCATGATGTCGATGGAATTCAAATTAAACCCAATTCTAAGCACATATGGATAGACCGTTGCAGCCTCCGTGACTATGACGATGGATTGATTGATATCACCCGTGAAAGCACAGATATCACTATTTCTAGGTGTCACTTCTCGCAGCATGATAAGACAATGCTCATTGGAGCAGATCCCTCTCACACTGGTGACAGATGTATCCGTGTAACTATTCACCACTGTTTTTTTGATGGTACACGACAACGGCATCCACGTGTTCGATTTGCTCAAGTACATATGTACAACAATTACATCAGAGGTTGGGGAATCTATGCCGTTTGTGCTAGTGTAGAATCACAGATTTTCTCTCAATGCAACATATATGAAGCTGGACAAAAGAAGGTCGCTTTTAAGTATCTAACGGAAAAGGCAGCAGACAAGAAAGAGGCATCAACTGGGTGCATATGGTCTGAAGGAGACTTATTTGTAAGTGAAACTCAAAGTGGGCTAATGGCTACAACTAATGGAGACAACTTGTTTCATCCTACCAAATACTACTCTGCTTGGACAGTGGAACCTCCCACAGATGCTCTCAAGCATATTCTCCAACATTCTATTGGCTGCCAGTTTATTCCACTTCCCACAGACCAGCCTCTGGTGGCTTAG 1119 43.7 MGNSHGHRKNRNPSRPINANSPKPNYKYDPSTLASQSQIPMASSLPYGHVDSSLRALAAQAEGFGRFAIGGLHGSVYCVTNLEDDGPGSLRYGCRMKEPLWIIFEISGTINLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIHHCFFDGTRQRHPRVRFAQVHMYNNYIRGWGIYAVCASVESQIFSQCNIYEAGQKKVAFKYLTEKAADKKEASTGCIWSEGDLFVSETQSGLMATTNGDNLFHPTKYYSAWTVEPPTDALKHILQHSIGCQFIPLPTDQPLVA 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4201793 4204647 + evm.model.ptg000007l.631 HCH9g0631 551263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0631 372 MobiDBLite consensus disorder prediction 13 33 - -
HCH9g0631 372 PRINTS Pollen allergen Amb family signature 60 77 IPR018082 -
HCH9g0631 372 PRINTS Pollen allergen Amb family signature 262 281 IPR018082 -
HCH9g0631 372 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
HCH9g0631 372 Pfam Pectate lyase 115 278 IPR002022 -
HCH9g0631 372 SUPERFAMILY Pectin lyase-like 60 354 IPR011050 -
HCH9g0631 372 SMART amb_all 87 285 IPR002022 -
HCH9g0631 372 MobiDBLite consensus disorder prediction 1 33 - -
HCH9g0631 372 PANTHER PECTATE LYASE 18-RELATED 53 346 IPR045032 GO:0030570(InterPro)
HCH9g0631 372 Gene3D - 47 355 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0631 HCH-Chr9:4201793 HCH13g0367 HCH-Chr13:2441338 1.00E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0631 K01728 - csv:101219724 625.55