Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0645 ATGAATACCAAATTCAGCAAATGGTGTGTCTCAGCAAAGCCATTTTTTGCTGTGGTATTCTTGCAATTTGGGCTTGCAGGAATGGACATTCTGTCTAAAGCTGCTCTCAACCAAGGAATGAGCAACTACGTCCTTGTCGTCTATCGCCACGCCGTTGCCACAGTTGTCATAGCTCCTTTTGCACTCATTTTTGACAAGAAAGTCAGACCAAAAATGACCATTTCAGTCTTTACAAAGCTAGTGGCCCTCAGCTTGCTAGAGCCTGTAATTGATCAGAACTTATATTTCTTGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCTATGTGCAATATTCTTCCTGCCATTACTTTTGTAATGGCTTGGATTCTAAGGCTTGAAAAGGTGAGAATCAAAAGCATCAGAAGCCAGGCTAAGTTGGTGGGAACCATAGCAACAGTAGGAGGAGCCATGATAATGACACTGTTGAAAGGTCCAATAGTGGAGTTATTTTGGATAAAAGAGGGAGCAAATCATCAACAGCAAAGGGGTGATATCAGTCTTCAACATACAATTAAGGGTTCCATAATGATCACAATTGGCTGCTTTAGCTGGGCCTGTTTCATGATTCTTCAGGCAATCACTTTGAAAGCTTATCCAGCGGAGCTTTCTTTGACGGCTTGGATTTGCTTTCTGGGAACCGTGGAGGGAAGTGTATTGGCTTTGGTTATGGAAAGAGGAAATCCTTCAGTCTGGTCCATCACTTGGGGAACTAAATTACTTGCTGCTGTTTACAGTGGGATATTTTGCTCAGGACTGGCTTATTACGTGCAAGGAATAGTGATGAAAGATAGAGGGCCTGTGTTTGTGACAGCCTTCAACCCTTTGAGCATGGTGATTGTGGCCATAATGAGCTCTTTCATTTTGGGTGAACGTCTTTATCTCGGAAGGATACTTGGTGCTGCAGTCATAATAGGAGGGCTGTACCTTGTTGTTTGGGGGAAAGGAAAAGATGGAGATTCGTCAAGTGAAGAGCTAAAGTTGCCTACAAAACAAATAAAAGAGACAGAAGGAAACAGCAATGAAAATTTTAACCATGAACTCATCACAATTGAGGCATCTGACGGTGTAGCAATCACAAAAGATGACCAAATCACTAATAATGCAAATAGAATCATATAA 1164 41.84 MNTKFSKWCVSAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATVVIAPFALIFDKKVRPKMTISVFTKLVALSLLEPVIDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWILRLEKVRIKSIRSQAKLVGTIATVGGAMIMTLLKGPIVELFWIKEGANHQQQRGDISLQHTIKGSIMITIGCFSWACFMILQAITLKAYPAELSLTAWICFLGTVEGSVLALVMERGNPSVWSITWGTKLLAAVYSGIFCSGLAYYVQGIVMKDRGPVFVTAFNPLSMVIVAIMSSFILGERLYLGRILGAAVIIGGLYLVVWGKGKDGDSSSEELKLPTKQIKETEGNSNENFNHELITIEASDGVAITKDDQITNNANRII 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4288877 4291623 - evm.model.ptg000007l.645 HCH9g0645 551277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0645 387 MobiDBLite consensus disorder prediction 333 353 - -
HCH9g0645 387 PANTHER WAT1-RELATED PROTEIN 17 339 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH9g0645 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 331 - -
HCH9g0645 387 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020(InterPro)
HCH9g0645 387 Pfam EamA-like transporter family 23 135 IPR000620 GO:0016020(InterPro)
HCH9g0645 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0119 HCH-Chr13:752366 HCH9g0645 HCH-Chr9:4288877 4.60E-97 dispersed
HCH1g0470 HCH-Chr1:53296202 HCH9g0645 HCH-Chr9:4288877 1.40E-109 dispersed
HCH1g0471 HCH-Chr1:53303737 HCH9g0645 HCH-Chr9:4288877 1.40E-114 dispersed
HCH6g1508 HCH-Chr6:48637171 HCH9g0645 HCH-Chr9:4288877 9.00E-69 dispersed
HCH8g0979 HCH-Chr8:45915588 HCH9g0645 HCH-Chr9:4288877 1.60E-46 dispersed
HCH9g0645 HCH-Chr9:4288877 HCH9g0974 HCH-Chr9:7272502 7.00E-93 dispersed
HCH1g0562 HCH-Chr1:54561738 HCH9g0645 HCH-Chr9:4288877 2.00E-25 wgd
HCH1g0468 HCH-Chr1:53260165 HCH9g0645 HCH-Chr9:4288877 5.30E-37 wgd
HCH13g0453 HCH-Chr13:3142416 HCH9g0645 HCH-Chr9:4288877 4.00E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0645 - - - 0.0