Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0661 ATGGTTTTTTCTTCCATTCCAGCTTATCTTGATCCATCTCAATGGCATCAGCAGCAAGCAAACCATCAATCTGCAGCTGCTAGTAGCCGCATCGGTGGAGCCTCTAGTTTTCAGTTTATATCACATACATCCCCTCCGCCGCCACCAGCTCAAGCTTCTCATGGAGGAGGAGGAGGAGGCGCAGGCTCCATCAGGCCTGGTTCGATGGTGGATCGAGCTCGAATGGCGAACCTTCCGATGCCGGAGTCAGCGCTTAAATGCCCTAGATGTGAATCCACAAACACTAAGTTTTGCTACTTCAACAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACTCGCGGCGGAGCCCTCAGAAGCGTTCCTGTCGGCGGCGGATACCGTAGGAATAACAAAAGACCAAGCAAAAGCAACTCCAAATCCCCAGTTAACTCTCAACAACGCCAAGTTACTTCAGACCCTGAAGCATCGAGCCTAGAGACACAGATCCCATCTTCAAAGTTTATTTCTCCATTACATCATCAACTTACAGATGGAGATCATCATCGAATGAGCTTAAATTACAGCCGTCTGAATAATTACAGTACTGCCATTTCTGCACCAAACAATGGAGCCGGTGGAGATTTGAATTTTCCAAACTTTTCAGGTTTTGATCAAATCCAATGGCGGCTGCAGCTTCAACTTCAGCAAACACAGCAGCCACCATTGTTAGCAACTTCAGCTGCAGGAGGGTTATTTGGAAGCAACACTATGGGTGAGGCTTCATCAAGTTATAATAACAATAATATTGGTCAGATTCAGCAGAAGATGGAAGAAGCTAAAATGGAAGAAAATGGGAACGAAGAAGAAGTTAAGATGGGAACAGGGAGGCAGTTTTTGGGAGTTTCAGGAAGTGATAATCATCATTATTGGAGTGGTTTTGCCCCATCTTATTCCCATACCTGA 966 46.58 MVFSSIPAYLDPSQWHQQQANHQSAAASSRIGGASSFQFISHTSPPPPPAQASHGGGGGGAGSIRPGSMVDRARMANLPMPESALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRPSKSNSKSPVNSQQRQVTSDPEASSLETQIPSSKFISPLHHQLTDGDHHRMSLNYSRLNNYSTAISAPNNGAGGDLNFPNFSGFDQIQWRLQLQLQQTQQPPLLATSAAGGLFGSNTMGEASSSYNNNNIGQIQQKMEEAKMEENGNEEEVKMGTGRQFLGVSGSDNHHYWSGFAPSYSHT 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4395564 4396851 + evm.model.ptg000007l.661 HCH9g0661 551293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0661 321 Pfam Dof domain, zinc finger 83 139 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH9g0661 321 Coils Coil 270 290 - -
HCH9g0661 321 MobiDBLite consensus disorder prediction 143 167 - -
HCH9g0661 321 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH9g0661 321 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH9g0661 321 MobiDBLite consensus disorder prediction 37 67 - -
HCH9g0661 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 74 272 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0661 321 MobiDBLite consensus disorder prediction 126 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0119 HCH-Chr6:1506484 HCH9g0661 HCH-Chr9:4395564 1.40E-27 dispersed
HCH7g1722 HCH-Chr7:49017136 HCH9g0661 HCH-Chr9:4395564 4.40E-24 dispersed
HCH8g1222 HCH-Chr8:47617732 HCH9g0661 HCH-Chr9:4395564 8.50E-25 dispersed
HCH9g0252 HCH-Chr9:1569505 HCH9g0661 HCH-Chr9:4395564 5.60E-21 dispersed
HCH9g0661 HCH-Chr9:4395564 HCH9g1390 HCH-Chr9:45870992 3.00E-20 dispersed
HCH1g0461 HCH-Chr1:53141110 HCH9g0661 HCH-Chr9:4395564 3.90E-41 wgd
HCH11g0198 HCH-Chr11:1883786 HCH9g0661 HCH-Chr9:4395564 2.60E-57 wgd
HCH13g0472 HCH-Chr13:3272594 HCH9g0661 HCH-Chr9:4395564 1.70E-44 wgd
HCH2g1095 HCH-Chr2:53827983 HCH9g0661 HCH-Chr9:4395564 1.50E-38 wgd
HCH3g1348 HCH-Chr3:51161943 HCH9g0661 HCH-Chr9:4395564 1.90E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34159 PF02701 zf-Dof 4.20E-31 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0661 - - - 0.0