Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0661 ATGGTTTTTTCTTCCATTCCAGCTTATCTTGATCCATCTCAATGGCATCAGCAGCAAGCAAACCATCAATCTGCAGCTGCTAGTAGCCGCATCGGTGGAGCCTCTAGTTTTCAGTTTATATCACATACATCCCCTCCGCCGCCACCAGCTCAAGCTTCTCATGGAGGAGGAGGAGGAGGCGCAGGCTCCATCAGGCCTGGTTCGATGGTGGATCGAGCTCGAATGGCGAACCTTCCGATGCCGGAGTCAGCGCTTAAATGCCCTAGATGTGAATCCACAAACACTAAGTTTTGCTACTTCAACAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACTCGCGGCGGAGCCCTCAGAAGCGTTCCTGTCGGCGGCGGATACCGTAGGAATAACAAAAGACCAAGCAAAAGCAACTCCAAATCCCCAGTTAACTCTCAACAACGCCAAGTTACTTCAGACCCTGAAGCATCGAGCCTAGAGACACAGATCCCATCTTCAAAGTTTATTTCTCCATTACATCATCAACTTACAGATGGAGATCATCATCGAATGAGCTTAAATTACAGCCGTCTGAATAATTACAGTACTGCCATTTCTGCACCAAACAATGGAGCCGGTGGAGATTTGAATTTTCCAAACTTTTCAGGTTTTGATCAAATCCAATGGCGGCTGCAGCTTCAACTTCAGCAAACACAGCAGCCACCATTGTTAGCAACTTCAGCTGCAGGAGGGTTATTTGGAAGCAACACTATGGGTGAGGCTTCATCAAGTTATAATAACAATAATATTGGTCAGATTCAGCAGAAGATGGAAGAAGCTAAAATGGAAGAAAATGGGAACGAAGAAGAAGTTAAGATGGGAACAGGGAGGCAGTTTTTGGGAGTTTCAGGAAGTGATAATCATCATTATTGGAGTGGTTTTGCCCCATCTTATTCCCATACCTGA 966 46.58 MVFSSIPAYLDPSQWHQQQANHQSAAASSRIGGASSFQFISHTSPPPPPAQASHGGGGGGAGSIRPGSMVDRARMANLPMPESALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRPSKSNSKSPVNSQQRQVTSDPEASSLETQIPSSKFISPLHHQLTDGDHHRMSLNYSRLNNYSTAISAPNNGAGGDLNFPNFSGFDQIQWRLQLQLQQTQQPPLLATSAAGGLFGSNTMGEASSSYNNNNIGQIQQKMEEAKMEENGNEEEVKMGTGRQFLGVSGSDNHHYWSGFAPSYSHT 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4395564 4396851 + evm.model.ptg000007l.661 HCH9g0661 551293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0661 321 Pfam Dof domain, zinc finger 83 139 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH9g0661 321 Coils Coil 270 290 - -
HCH9g0661 321 MobiDBLite consensus disorder prediction 143 167 - -
HCH9g0661 321 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH9g0661 321 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH9g0661 321 MobiDBLite consensus disorder prediction 37 67 - -
HCH9g0661 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 74 272 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0661 321 MobiDBLite consensus disorder prediction 126 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0661 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0119 HCH-Chr6:1506484 HCH9g0661 HCH-Chr9:4395564 1.40E-27 dispersed
HCH7g1722 HCH-Chr7:49017136 HCH9g0661 HCH-Chr9:4395564 4.40E-24 dispersed
HCH8g1222 HCH-Chr8:47617732 HCH9g0661 HCH-Chr9:4395564 8.50E-25 dispersed
HCH9g0252 HCH-Chr9:1569505 HCH9g0661 HCH-Chr9:4395564 5.60E-21 dispersed
HCH9g0661 HCH-Chr9:4395564 HCH9g1390 HCH-Chr9:45870992 3.00E-20 dispersed
HCH1g0461 HCH-Chr1:53141110 HCH9g0661 HCH-Chr9:4395564 3.90E-41 wgd
HCH11g0198 HCH-Chr11:1883786 HCH9g0661 HCH-Chr9:4395564 2.60E-57 wgd
HCH13g0472 HCH-Chr13:3272594 HCH9g0661 HCH-Chr9:4395564 1.70E-44 wgd
HCH2g1095 HCH-Chr2:53827983 HCH9g0661 HCH-Chr9:4395564 1.50E-38 wgd
HCH3g1348 HCH-Chr3:51161943 HCH9g0661 HCH-Chr9:4395564 1.90E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT1G29160 56.3 1.5e-45 179.5
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT1G29160 51.2 1.8e-40 162.5
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT2G34140 56.1 9.8e-47 183.3
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT2G34140 51.2 7.0e-37 150.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.0
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.2e-38 154.8
HCH3g1348 . 1 134 C2C2-Dof Transcription Factor Family AT2G37590 56.0 6.1e-37 151.8
HCH14g0246 . 1 215 C2C2-Dof Transcription Factor Family AT5G66940 51.3 6.9e-48 187.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT5G02460 64.4 3.0e-38 156.4
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 62.6 9.6e-37 151.4
HCH3g1348 . 61 134 C2C2-Dof Transcription Factor Family AT5G02460 87.8 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012147 0 0 1 0 0 1 2 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34159 PF02701 zf-Dof 4.20E-31 No_clan HCH TF