Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0677 ATGGCTTCCCTCACACTCCTCCTCTGCATTGCCTCTCTCTCCTCCCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGAATCTACTCCGGCGGCCCCTGGCAAGACGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCAGGAACAATGGGTGGTGCTTGTGGATATGGAAATCTATACAGTCAAGGGTACGGCGTGAACACAGCAGCATTAAGCACGGCTCTATTCAACAGTGGACTCAGCTGCGGCGCTTGCTTTGAAATCAAATGCGCCAACGATCCTCAATGGTGCCATCCTGGAAACCCCTCCATTTTAATCACCGCCACAAATTTCTGTCCTCCCAATTTTGCCCTTCCCAGCGACAATGGTGGTTGGTGTAACCCTCCTCGTACTCATTTCGATCTCGCCATGCCCATGTTTCTCAAGATTGCTGAATATCGCGCCGGAATTGTCCCGGTTTCTTATCGCCGGGTTCCATGCAGGAAGCAAGGAGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAACTTGGTATTAGTCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTTAGCATTAAAGGATCAAACACTGGTTGGATGACCATGAGCAGAAACTGGGGGCAAAACTGGCAATCCAACTCCGTTTTAGTGGGCCAGTCTATTTCCTTTAGAGTCACCGGCAGTGACCGTCGTACGTCAACTTCATGGAACGTGGCACCCGCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTCTGA 780 52.56 MASLTLLLCIASLSSLFLLSHARIPGIYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDPQWCHPGNPSILITATNFCPPNFALPSDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSIKGSNTGWMTMSRNWGQNWQSNSVLVGQSISFRVTGSDRRTSTSWNVAPANWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4503623 4505262 - evm.model.ptg000007l.677 HCH9g0677 551309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0677 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 Pfam Lytic transglycolase 68 155 IPR009009 -
HCH9g0677 259 FunFam Expansin 165 257 - -
HCH9g0677 259 Gene3D - 165 257 IPR036749 -
HCH9g0677 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
HCH9g0677 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
HCH9g0677 259 CDD DPBB_EXPA_N 32 160 - -
HCH9g0677 259 Gene3D - 22 161 IPR036908 -
HCH9g0677 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
HCH9g0677 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
HCH9g0677 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
HCH9g0677 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
HCH9g0677 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
HCH9g0677 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
HCH9g0677 259 PANTHER EXPANSIN-A15 15 257 IPR002963 GO:0009664(InterPro)
HCH9g0677 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
HCH9g0677 259 SMART dpbb_1 68 155 IPR007112 -
HCH9g0677 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
HCH9g0677 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
HCH9g0677 259 FunFam Expansin 22 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0914 HCH-Chr1:57522355 HCH9g0677 HCH-Chr9:4503623 7.70E-101 dispersed
HCH6g0686 HCH-Chr6:40159949 HCH9g0677 HCH-Chr9:4503623 2.10E-64 dispersed
HCH6g0949 HCH-Chr6:44316205 HCH9g0677 HCH-Chr9:4503623 3.10E-76 dispersed
HCH7g0380 HCH-Chr7:2758765 HCH9g0677 HCH-Chr9:4503623 1.00E-68 dispersed
HCH8g1292 HCH-Chr8:48034614 HCH9g0677 HCH-Chr9:4503623 2.50E-99 dispersed
HCH9g0288 HCH-Chr9:1772104 HCH9g0677 HCH-Chr9:4503623 4.00E-84 dispersed
HCH9g0547 HCH-Chr9:3578991 HCH9g0677 HCH-Chr9:4503623 4.80E-93 transposed
HCH1g0451 HCH-Chr1:53033480 HCH9g0677 HCH-Chr9:4503623 1.30E-135 wgd
HCH13g0492 HCH-Chr13:3426508 HCH9g0677 HCH-Chr9:4503623 3.10E-124 wgd
HCH2g1077 HCH-Chr2:53739421 HCH9g0677 HCH-Chr9:4503623 1.40E-137 wgd
HCH3g1367 HCH-Chr3:51405928 HCH9g0677 HCH-Chr9:4503623 1.40E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0677 - - - 0.0