Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0690 ATGGCCACAATCTTCAACTTCACGTTAATTATTTTCATATCAATTGCTGTATTTTTTGCAGCTTCTCAAGATAACATCTTCACCTTCCATGGCTTCCGATCTTTCGATCTCATCCTTCACGGTATCGCCCAAGTAACCTCTAATGGCCTCTTGAAGCTTACTAATGAAATCGAGCAACAAACGGGTCATGCCTTCTATCCAAATCCCATTACCTTCAAAAACTTGTCTAATAATAATTCCTCGATTCTCTCTTTCTCTACAACTTTCGTCTTCGCCATAGTTTCCGAGTATCCAGACCTCGGTGGCCACGGAATTGCTTTCGTTGTTTCTCCGACGAGAGGTATTATGGGAGCTCGGCCGAGTGAGAGCCTCGGCCTTTTTAATGAATCAAACAATGGAAATGACACGAATCATATTTTCGCGGTTGAGCTCGACACGATCCAGAACAAGAATCTTAGAGACATCAATGATAACCATGTTGGAATTAATATCAATGGACTGCAATCCTTGGTAGCTGCACCTGCTGGTTATTATGACGATACGAAAGGCGAATTTCGAAACTTGACGCTGATAAGCGGCCAACCGATGCAACTTTGGGTCGAATATGATGGTTTCATGAAGGAGATAAAGGTCACTATGGCTTCCATGGAAATTGATAAACCTAAAACCCCACTTCTATCGTTGAACCGTGATTTGTCATCGGTTATCAACGACATCATGTACGTCGGTTTCTCATCATCGACGGGCTCTATGTCGACATCGCATTATGTTCTTGGTTGGAGCTTTAGAATTAATGGAGAAGCTCAAAAACTTGCTCTCTCTCAACTACCTAAACTTCCTCCAAGAAGAAAAGAGAGATCTCTAATTTTGACTATTGGGGTTCCTTTGATTTGTGTCTTCTTGGTTTTGGTGATAGCTGTAGTAATTTATTTCATTTGGAGGAAGAGGAAATTTGCTGAAATTTTAGAGGATTGGGAGCTTGAATATGGACCTCAAAGGCTCAAATACAAAGATCTATATATTGCTACTAAAGGATTTAGAGAAAGAGAATTTCTGGGGTTTGGTGGATTTGGTAGGGTTTATAAAGGAGTTTTACCAAATTCAAAAATTGACATAGCTGTGAAGAAGATTTCTCATGAATCAAGACAAGGGATGAAGGAGTTTGTAGCCGAGGTAGTGAGTATCGGTAGGCTTCGTCACCGGAATCTCGTGCCGTTGTTGGGCTATTGCCGGCGAAAAGGAGAGCTGTTATTGGTGTATGATTATATGCCAAATGGGAGCTTGGATAAGTATCTGTTCGACCAACCGGAAACCACACTAGATTGGGGACAGAGATTTAGGATCATCAAAGGAGTGGCCTTGGGGCTGTTTTATCTTCACGAAGAGTGGGATCAAGTTGTGATTCATAGAGATGTAAAGGCAAGTAATGTTTTACTCGATGCCGAATTCAATGGAAGATTGGGTGATTTTGGGTTAGCAAAATTATATGATCATGGGGCCGATCCTCGTACGACCCACGTTGTCGGAACTCTCGGGTATCTTGCACCAGAACAAACTCGAACAGGAAAATCTACAACAAAAACAGATGTATATGCATTCGGAGCATTTCTACTGGAAGTAGCTTGTGGGAGAAGACCCATTGACCCACAAGAAGAAGCAGAGGATTTCATATTAGTGGAATGGGTATTCTCTTGCTGGGCAAACGGCAACATTCTCACAGCAACCGATCCAAATTTAGGAAGAAACTACGAGGCAGAAGAAGTGGAGTTGGTGCTAAATCTTGGCTTGCTATGCTCCCATTCGTCGCCCGTGGCACGACCAAGCATGCTGCAGATCGTGCGGTTTTTGGAAGGCGACGTGCAGCTTCCAAGGCTGCAATCAATGGATTTGAGCGTTTCTTCTTTAAGTGGGTTAATGCTTTGGCATAGAGGCAATGGCGATGGCGATGAGAATACAATGTCTTATCCCATTTCCATGGAAAGGATTGTGTCCGTTTCGAGTTCTTCTTCTCTTGCTGGATCTGTTTTGTCGGAAGGTCGCTGA 2043 42.83 MATIFNFTLIIFISIAVFFAASQDNIFTFHGFRSFDLILHGIAQVTSNGLLKLTNEIEQQTGHAFYPNPITFKNLSNNNSSILSFSTTFVFAIVSEYPDLGGHGIAFVVSPTRGIMGARPSESLGLFNESNNGNDTNHIFAVELDTIQNKNLRDINDNHVGININGLQSLVAAPAGYYDDTKGEFRNLTLISGQPMQLWVEYDGFMKEIKVTMASMEIDKPKTPLLSLNRDLSSVINDIMYVGFSSSTGSMSTSHYVLGWSFRINGEAQKLALSQLPKLPPRRKERSLILTIGVPLICVFLVLVIAVVIYFIWRKRKFAEILEDWELEYGPQRLKYKDLYIATKGFREREFLGFGGFGRVYKGVLPNSKIDIAVKKISHESRQGMKEFVAEVVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLFDQPETTLDWGQRFRIIKGVALGLFYLHEEWDQVVIHRDVKASNVLLDAEFNGRLGDFGLAKLYDHGADPRTTHVVGTLGYLAPEQTRTGKSTTKTDVYAFGAFLLEVACGRRPIDPQEEAEDFILVEWVFSCWANGNILTATDPNLGRNYEAEEVELVLNLGLLCSHSSPVARPSMLQIVRFLEGDVQLPRLQSMDLSVSSLSGLMLWHRGNGDGDENTMSYPISMERIVSVSSSSSLAGSVLSEGR 680
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 4598386 4601007 - evm.model.ptg000007l.690 HCH9g0690 551322
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0690 680 SUPERFAMILY Protein kinase-like (PK-like) 328 637 IPR011009 -
HCH9g0690 680 FunFam L-type lectin-domain containing receptor kinase S.4 423 629 - -
HCH9g0690 680 FunFam Lectin-domain containing receptor kinase A4.3 331 422 - -
HCH9g0690 680 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
HCH9g0690 680 FunFam L-type lectin-domain containing receptor kinase V.9 24 269 - -
HCH9g0690 680 Pfam Protein kinase domain 348 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0690 680 ProSiteProfiles Protein kinase domain profile. 346 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0690 680 CDD STKc_IRAK 352 618 - -
HCH9g0690 680 CDD lectin_legume_LecRK_Arcelin_ConA 27 266 IPR001220 GO:0030246(InterPro)
HCH9g0690 680 SMART serkin_6 346 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0690 680 Pfam Legume lectin domain 27 277 IPR001220 GO:0030246(InterPro)
HCH9g0690 680 Gene3D - 25 276 - -
HCH9g0690 680 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 283 IPR013320 -
HCH9g0690 680 PANTHER - 28 631 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
HCH9g0690 680 Gene3D Transferase(Phosphotransferase) domain 1 423 634 - -
HCH9g0690 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0690 680 ProSitePatterns Protein kinases ATP-binding region signature. 352 376 IPR017441 GO:0005524(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0062 HCH-Chr11:992771 HCH9g0690 HCH-Chr9:4598386 1.20E-156 dispersed
HCH11g0172 HCH-Chr11:1737807 HCH9g0690 HCH-Chr9:4598386 9.60E-255 dispersed
HCH7g0145 HCH-Chr7:989427 HCH9g0690 HCH-Chr9:4598386 8.00E-124 dispersed
HCH9g0690 HCH-Chr9:4598386 HCH9g0694 HCH-Chr9:4620381 1.70E-179 dispersed
HCH9g0745 HCH-Chr9:4992984 HCH9g0690 HCH-Chr9:4598386 1.70E-16 dispersed
HCH9g0690 HCH-Chr9:4598386 HCH9g0691 HCH-Chr9:4607767 1.20E-286 tandem
HCH6g1419 HCH-Chr6:48001460 HCH9g0690 HCH-Chr9:4598386 4.40E-68 transposed
HCH8g1421 HCH-Chr8:48843406 HCH9g0690 HCH-Chr9:4598386 1.90E-138 transposed
HCH7g0372 HCH-Chr7:2680043 HCH9g0690 HCH-Chr9:4598386 7.50E-98 transposed
HCH11g0171 HCH-Chr11:1731887 HCH9g0690 HCH-Chr9:4598386 1.40E-194 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81761 PF00069 Pkinase 1.10E-43 CL0016 HCH PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0690 - - - 0.0