Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0693 ATGGCTTCTATGTTGTTTAGATTTTTCTCAGCGATAATTTTTCTCGCCATCCAAACACTATCCCAACACAACAACCTCTTCTATGCCGGATTCAAACACGCAAGCTCCAATTTAACCTTAAATGGGATTGCAGAGATTGAAGAAAATGGTATTTTAAGACTTACAAACCATTCCAATGGAGCAGTTGGTCATGCATTCTACAGCTCTCCTTTCCAATTCAAAAACTCTACAAACGGCAAAGCTTTTTCTTTCTCCACCTCTTTCGCTTTCGCCATCGTCGCCGATCACGCGACATTCAGCGGCCACGGCTTAGCTTTTGCAGTGGTGGCACCTTTTAAAGATCTTAGAGGTCTGTCCGCTCAGTATCTTGGTCTCTTGAACGAGAACAATACAGCAGGGAATATCTCCAACCATCTTTTTGCTGTCGAATTTGATACAATCAAAGATGTTGGATTTAGAGACATAAATGACAATCATGTCGGGGTTGATATTAATAGCTTGGTTTCTAAAGTCTCCGCCGCCGCCGAGTATTTTGACGACGACGGTGGAAAGAAAGATTTGAGGCTTAAAAGTGGGAAAGTCATCATGGCTTGGATAGATTATGATTCTGCTACAAACATTGTGAGTGTTGCTATTTCTCTTTCCTCAAAGCCCAAGAAGCCACTTTTGTCATATGAAGTAGATCTCTCGTTGATTTTGAATGAAGAAATGTATGTGGGGTTCTCTGCTTCAACTGGTTTGCTTGCTAGCTCGCAGTATATTTTAGGTTGGAGTTTTGCTATTAATGGGCAAGCTCTAGATCTCGATCTCTCTTCTCTTCCTCCAATTCCAAGGCCTATTAAGAAGCAAATGAGTTTAACGATTGCAGTTTCAGTTTTGGCTATTGTCATCGCAATTTTGGTATTCTTGTTTGCTATTTTTCTCTTTAGAAAGTTCAGGAGCAATGCTGATATGACTGAGCTGTGGGAGCTTCAAATTGCGCCACATCGATATTCCTACGCAGAACTCTATCAAGCGACCAAAGGTTTTAGCAACAAAGAGCTACTAGGACAAGGTGGATTTGGGAAGGTTTACAATGGGATTCTTTCGGATTCCAATACTCATGTTGCTGTCAAGCGGATTTCCCATGATTCCAAACAAGGTTTCCGCGAATTCTTGTCCGAAATCGCGACAATCGGTATGCTACGACACCGTAATTTGGTTCAATTGTTGGGTTGGTGCCGTCGCGGGCAAGATCTAGTCCTTGTTTATGAATATTTGGCTAACGGAAGCTTAGATAAATACTTATTCGACGAACCAAAAACAATTCTCAGTTGGGAGCAGAGGTTTAGGATCATAAAGGGTGTCGCCTCTGCCCTTTTGTATCTACACGAAGGCTACGATCAAGTCGTGATTCATCGAGACGTAAAGGCTAGTAATGTCTTGTTGGATAGTGGTTTAAATGGAAGATTAGGCGATTTTGGTCTCGCTAGAGTTTACGAACGTGAATCAACCCCTGCGACAACTCGGGTTGTAGGGACATTAGGCTATCTCGCTCCCGAACTATCGAAAACTGGAAAATCAACGACGAGCTCCGATGTCTACGCATTTGGAGCAGTGTTGCTCGAAGTTGCTTGCGGCAGGCGGCCGGTTGAGTTGAAGGCATTGCCTGAGGAGATGATATTGGTTGATTGGGTGTGGGAGAAATTTAGAGAAGGGAGACTACTTGAGGTTGTGGATTCAAAGCTTGGAGGAGAATATGATGAAAATGAGATGGAGATGGTGTTGAAATTGGGAGTCATTTGTTCTAGCAATGAGCCGAAGCAAAGACCGAGCATGAAGCAAATAGTGAGATGCTTGGATGGTGAAAATGGTGTTGCTGGTGATTGGAAAGATCCAAATGGAATTGATGGAGACAAGATCAAGGGAAGTGGATTGGATGATTTTAAGCTCTCAATTACATCTTCTTCATCTATCAACAGCAAGGAAAGCTCTTGCTTATCCATTGTTAATGGAGATATGGGTTTGAGTTTGGTCTCTCCTTCATCTTCTAATTCACCAAGCTAG 2046 42.52 MASMLFRFFSAIIFLAIQTLSQHNNLFYAGFKHASSNLTLNGIAEIEENGILRLTNHSNGAVGHAFYSSPFQFKNSTNGKAFSFSTSFAFAIVADHATFSGHGLAFAVVAPFKDLRGLSAQYLGLLNENNTAGNISNHLFAVEFDTIKDVGFRDINDNHVGVDINSLVSKVSAAAEYFDDDGGKKDLRLKSGKVIMAWIDYDSATNIVSVAISLSSKPKKPLLSYEVDLSLILNEEMYVGFSASTGLLASSQYILGWSFAINGQALDLDLSSLPPIPRPIKKQMSLTIAVSVLAIVIAILVFLFAIFLFRKFRSNADMTELWELQIAPHRYSYAELYQATKGFSNKELLGQGGFGKVYNGILSDSNTHVAVKRISHDSKQGFREFLSEIATIGMLRHRNLVQLLGWCRRGQDLVLVYEYLANGSLDKYLFDEPKTILSWEQRFRIIKGVASALLYLHEGYDQVVIHRDVKASNVLLDSGLNGRLGDFGLARVYERESTPATTRVVGTLGYLAPELSKTGKSTTSSDVYAFGAVLLEVACGRRPVELKALPEEMILVDWVWEKFREGRLLEVVDSKLGGEYDENEMEMVLKLGVICSSNEPKQRPSMKQIVRCLDGENGVAGDWKDPNGIDGDKIKGSGLDDFKLSITSSSSINSKESSCLSIVNGDMGLSLVSPSSSNSPS 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4616590 4618635 + evm.model.ptg000007l.693 HCH9g0693 551325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0693 681 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524(InterPro)
HCH9g0693 681 Gene3D - 25 269 - -
HCH9g0693 681 CDD lectin_legume_LecRK_Arcelin_ConA 25 263 IPR001220 GO:0030246(InterPro)
HCH9g0693 681 CDD STKc_IRAK 349 615 - -
HCH9g0693 681 FunFam L-type lectin-domain containing receptor kinase IX.1 328 419 - -
HCH9g0693 681 SUPERFAMILY Protein kinase-like (PK-like) 325 611 IPR011009 -
HCH9g0693 681 PANTHER - 31 617 IPR050528 GO:0005886(PANTHER)
HCH9g0693 681 SMART serkin_6 343 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0693 681 Pfam Legume lectin domain 26 273 IPR001220 GO:0030246(InterPro)
HCH9g0693 681 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
HCH9g0693 681 FunFam L-type lectin-domain containing receptor kinase S.4 420 625 - -
HCH9g0693 681 FunFam L-type lectin-domain containing receptor kinase S.4 22 267 - -
HCH9g0693 681 ProSiteProfiles Protein kinase domain profile. 343 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0693 681 Gene3D Transferase(Phosphotransferase) domain 1 420 621 - -
HCH9g0693 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 282 IPR013320 -
HCH9g0693 681 Pfam Protein tyrosine and serine/threonine kinase 346 613 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0693 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0171 HCH-Chr11:1731887 HCH9g0693 HCH-Chr9:4616590 2.00E-225 dispersed
HCH6g1419 HCH-Chr6:48001460 HCH9g0693 HCH-Chr9:4616590 3.60E-70 dispersed
HCH9g0693 HCH-Chr9:4616590 HCH6g0622 HCH-Chr6:37425742 8.90E-67 dispersed
HCH9g0693 HCH-Chr9:4616590 HCH9g0694 HCH-Chr9:4620381 1.20E-300 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81763 PF07714 PK_Tyr_Ser-Thr 1.40E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0693 - - - 0.0