Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0694 ATGATGGTTTCCGCGTTTATTCGATTTTTCTCAGCCATAATCTTTCTCTCCATCCAAACACTATCCCAGCAAAACAACATCTTCTATGTCGGATTCCAAGACGCAAGCTCCAATTTAATCCTAGACGGGATTGCAGAGATTGAGAAAAATGGTATTTTACGACTTACAAACGACACCAATGACGCAGTGGGTCATGCTTTTTACAGCTCTCCTTTCCGTTTCAAAAACTCCACAGACGGTAGAGCTTTTTCCTTCTCCACGTCTTTTGCTTTCGGCATTGTCGTCGAAAATTGGAAATACAGTGGCCATGGCTTCGCTTTCGCAGTGGCGCCGTCTAAACATCCCACGGGGTTTCCTAGCAAGTATCTAGGTCTCTTAAATGAGGACGACATTGGTGAAAATTCCAACCATCTTTTTGCTGTCGAATTTGACACAGTCCGAGATTTTGGATTTGGAGACATAAACAACAACCACATTGGTGTCAATATCAATAGCTTGGTTTCAAAGGTCTCAACCCCCGCTGCGTATTTCGACGACACCGACGGCGAAACGAAAGATTTGAAGCTTAAAAGTGGGAAGGTCATCACGGCTTGGATTGATTATGATGCTTCTCAAAACATTGTGAATGTTACTATTTCGCCGTTTTCTTTGAAACCTCAAAAACCACTTATTTCATGTCATGTAGATCTCTCGTTGATTGTCAATGAAGAAATGTACGTAGGGTTTTCTGCCTCGACAGGTTTGCTTGATAGCTCGCAGTATATTTTGGGTTGGAGTTTTGCTATTAATGAGCAAGCTCCTGATCTTGTTCTATCTTCTCTTCCTCCTCTCCCAGAACCCATCAAGAAGCAAATCGGTTTAATAATTGGATGTTCAGTTTCTGTGATTCTTTTCGCATTTTTGATATTCTTGTTTGCTATTTATCTGTTTAGAAGGTACAAAGATTCCTACATATTCGAGCCATGGGAGCTTCAAATCGGCCCGCATCGATATTCCTATAATGAACTCTGGCAAGCTACAAAAGGTTTTAGCGATAAGGAGATTCTCGGACAAGGCGGATTCGGGAAAGTTTATAATGGGATTCTCTCGAATTCGAAAACCCATGTTGCGGTTAAGAGAATTTCCCATGATTCTAAACAAGGTTTTCCTGAATTCTTATCAGAAATCACCACAATTGGCCTGCTCCGTCACCGGAATCTAGTTCAATTATTGGGATGGTGTCGTCGCGGTAAAGATCTAATCCTTGTTTATGAATATATGGCTAACGGAAGCTTAGATAGATACCTATTCAACGACCCGAAATCGATTCTTAGTTGGGAACAAAGGTTTAATATCATAAAGGGTGTTGCCTCTGCACTTCTGTATCTACACGAAGGCTACGAACAAGTAGTGATTCATCGAGACATAAAGGCATGCAATGTCTTGTTGGATAGAGATTTAAATGGGAGATTAGGCGATTTCGGTCTCGCTAGAGTTTACGAACGTGAATCAACTCCCGTAACGACTCGGGTTGTCGGGACATTAGGCTATCTGGCACCCGAACTATCGAAAACGGGAAAATCAACGACGAGCTCCGATGTCTACGCATTTGGGGCAGTATTGCTCGAAGTTGCTTGCGGCCGGCGACCGGTCGAGTTGAAGGCATTACCTGAGGAGATGGTATTGGTTGATTGGGTGTGGGAGAAATTTAGTGAAGGGAGACTACTTGAGGTTGTGGATTCAAAGCTTGGAGGAAAATATGATGAAAATGAGATGGAGATGGTGTTGAAATTGGGAGTCATTTGTTCTAACAATGAGCCGAAGCAAAGACCGAGCATGAAGCAAATAGTGAGATGCTTGGATGGTGAAAATGGTGTTGCTGGTGATTGGAAAGATCCAAATGGAAGTGATGGAGATAAGATCAAGGGAAGTAGATTGGATGAATTTAGGATCTCAGTTACATCTTCTTCATTCATAATCAGCAAGGAAAGCTCTTGCTTATCCACTGTTGATGGAGATATGAGTGTTAGTTTGGTCTCTCCATCTTCTCATTCATAG 2037 42.17 MMVSAFIRFFSAIIFLSIQTLSQQNNIFYVGFQDASSNLILDGIAEIEKNGILRLTNDTNDAVGHAFYSSPFRFKNSTDGRAFSFSTSFAFGIVVENWKYSGHGFAFAVAPSKHPTGFPSKYLGLLNEDDIGENSNHLFAVEFDTVRDFGFGDINNNHIGVNINSLVSKVSTPAAYFDDTDGETKDLKLKSGKVITAWIDYDASQNIVNVTISPFSLKPQKPLISCHVDLSLIVNEEMYVGFSASTGLLDSSQYILGWSFAINEQAPDLVLSSLPPLPEPIKKQIGLIIGCSVSVILFAFLIFLFAIYLFRRYKDSYIFEPWELQIGPHRYSYNELWQATKGFSDKEILGQGGFGKVYNGILSNSKTHVAVKRISHDSKQGFPEFLSEITTIGLLRHRNLVQLLGWCRRGKDLILVYEYMANGSLDRYLFNDPKSILSWEQRFNIIKGVASALLYLHEGYEQVVIHRDIKACNVLLDRDLNGRLGDFGLARVYERESTPVTTRVVGTLGYLAPELSKTGKSTTSSDVYAFGAVLLEVACGRRPVELKALPEEMVLVDWVWEKFSEGRLLEVVDSKLGGKYDENEMEMVLKLGVICSNNEPKQRPSMKQIVRCLDGENGVAGDWKDPNGSDGDKIKGSRLDEFRISVTSSSFIISKESSCLSTVDGDMSVSLVSPSSHS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4620381 4622417 + evm.model.ptg000007l.694 HCH9g0694 551326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0694 678 SMART serkin_6 343 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0694 678 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524(InterPro)
HCH9g0694 678 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
HCH9g0694 678 CDD STKc_IRAK 349 615 - -
HCH9g0694 678 FunFam L-type lectin-domain containing receptor kinase S.4 23 268 - -
HCH9g0694 678 Pfam Protein tyrosine and serine/threonine kinase 346 613 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0694 678 SUPERFAMILY Protein kinase-like (PK-like) 321 613 IPR011009 -
HCH9g0694 678 ProSiteProfiles Protein kinase domain profile. 343 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0694 678 Pfam Legume lectin domain 28 272 IPR001220 GO:0030246(InterPro)
HCH9g0694 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 282 IPR013320 -
HCH9g0694 678 Gene3D - 26 270 - -
HCH9g0694 678 FunFam L-type lectin-domain containing receptor kinase IX.1 328 419 - -
HCH9g0694 678 Gene3D Transferase(Phosphotransferase) domain 1 420 621 - -
HCH9g0694 678 FunFam L-type lectin-domain containing receptor kinase S.4 420 625 - -
HCH9g0694 678 CDD lectin_legume_LecRK_Arcelin_ConA 29 263 IPR001220 GO:0030246(InterPro)
HCH9g0694 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0694 678 PANTHER - 32 617 IPR050528 GO:0005886(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0800 HCH-Chr7:14169410 HCH9g0694 HCH-Chr9:4620381 9.90E-106 dispersed
HCH9g0690 HCH-Chr9:4598386 HCH9g0694 HCH-Chr9:4620381 1.70E-179 dispersed
HCH9g0691 HCH-Chr9:4607767 HCH9g0694 HCH-Chr9:4620381 1.60E-172 dispersed
HCH9g0694 HCH-Chr9:4620381 HCH7g0034 HCH-Chr7:244029 1.50E-66 dispersed
HCH9g0693 HCH-Chr9:4616590 HCH9g0694 HCH-Chr9:4620381 1.20E-300 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81764 PF07714 PK_Tyr_Ser-Thr 1.10E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0694 - - - 0.0