Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0718 ATGGCGGAGGGTTTTGAAGTCTACCATGTCCCACAACAAAGCAGAAGAGATAAGCTCGGAATCGGAGCCACAGCCGCAGCCACACCTAACAATAACAATAATTTCCACATCTCTTCTTCAGGTTTGCTTCCTTTATATGATCCTTCATTAATCTCCACCGATTTCCTCTCTGTCTCTTCTCAAGATTTTCACCACCCACTTCCTATAAACCAAACCCCTTTCCATAACATCAACTCTTCCACCAACCCATCTCTCTACGGCGGCGGTTACGGTGGCGATGAGTTGGCGCTTTTCAAACACCACCACCACCACCACCACCAAGAGCCCTTGTCTCTTGAGCTCAATCTTCAACGTTATGGCTCTTCTGCTGCTGCAGCAATTTTTACTTCTTCCATTAATGTAACAAACGATTCAGATTCTATCCCTCTTGGCCCATTTACGGGTTACGCTTCTATTTTGAAAGGCTCCAAATTCTTGAAACCGGCTCAGCTTTTACTGGAAGAGTTGTTTGATTATGGCGGCAGATTGGGAAATAACGCGGAGAAGTTGGTTACTGATTCAAACTTCATGGATCCTCTTTTGGAAAATTTGGATGGTGATATTGCTTCTTCTGATCACGATCCGATGAGTTGTAGTTCTGATGATGGAAATGAAAATCGGAGAAAAAAATCTAGGCTTATTTCCATGCTTGACGAGGTTTACAGAAGGTATAAACAGTACTATCAGCAGATGCAAGCCGTGGTTACAACATTCGAATATGTCGCAGGGCTTGGCAATGCAGCTCCTTATGTGAACTTGGCCGTAAAAACCATGTTTAAGCACTTCAGGTTGTTGAAGAACGCCATTGCTGACCAACTTCACTTCAACAACAACAACAAGCCGTATAACCCGTATTGCCAAAGATCCGTTCACAATGCTGCCGGTTTCCTCGACCATCACCAACCCGTCTGGCGACCGCAACGGGGTCTTCCAGAAAGCGCCGTCACCGTTCTCAGGGCATGGCTGTTTGAGCACTTCCTTCATCCATATCCTACGGACACAGACAAGCTTATGTTGGCGAATCAGACCGGTCTGTCGAGGAGCCAGGTATCAAACTGGTTTATCAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATTCACATGCTTGAAACAAGGCAAGCAGCTCAGAAATCTCAGCAAAGGGAAGGTGGAAATAGTGGCAATAGGTTAAACAACGATCATGCTTCATCCACAACCTCATTGAAACCAGGTCAGAATGCATCCGCCTCAATTTCCAACCAAGATCAGGCAGCGGATCAGCACACTCGAAACCAGCTAATTCACGATATGTCTGCGAGAAACGAGCCATTAAACACCTTGTCCAACCCCAACATCTTTTCAACCCATCCGCATGCGGCTGCAGGAGCAAGCATGGGCAATGGCGGAGGCGGTAATGTTTCGCTAACGCTCGGGCTTCACCAGAATAACCTTGGCATCGGTCTCACAGAACCGTATCCCATCAACGCAGTTGCAGCTCAACATTTTAACTTCGGCTTGGAAGGAAACGGTGAAGGGTTTGTAATTAATGGTTTTGTAGCAGAAAATCGGCATTTTGGAAGGAATGGCATGGGAGGGAAGCTGTTGCACGACTTTGTTGGCTGA 1650 46.42 MAEGFEVYHVPQQSRRDKLGIGATAAATPNNNNNFHISSSGLLPLYDPSLISTDFLSVSSQDFHHPLPINQTPFHNINSSTNPSLYGGGYGGDELALFKHHHHHHHQEPLSLELNLQRYGSSAAAAIFTSSINVTNDSDSIPLGPFTGYASILKGSKFLKPAQLLLEELFDYGGRLGNNAEKLVTDSNFMDPLLENLDGDIASSDHDPMSCSSDDGNENRRKKSRLISMLDEVYRRYKQYYQQMQAVVTTFEYVAGLGNAAPYVNLAVKTMFKHFRLLKNAIADQLHFNNNNKPYNPYCQRSVHNAAGFLDHHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAAQKSQQREGGNSGNRLNNDHASSTTSLKPGQNASASISNQDQAADQHTRNQLIHDMSARNEPLNTLSNPNIFSTHPHAAAGASMGNGGGGNVSLTLGLHQNNLGIGLTEPYPINAVAAQHFNFGLEGNGEGFVINGFVAENRHFGRNGMGGKLLHDFVG 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4783199 4787775 - evm.model.ptg000007l.718 HCH9g0718 551350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0718 549 MobiDBLite consensus disorder prediction 388 438 - -
HCH9g0718 549 MobiDBLite consensus disorder prediction 202 222 - -
HCH9g0718 549 SMART HOX_1 317 381 IPR001356 GO:0003677(InterPro)
HCH9g0718 549 SUPERFAMILY Homeodomain-like 319 384 IPR009057 -
HCH9g0718 549 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 419 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH9g0718 549 FunFam BEL1-like homeodomain protein 9 320 382 - -
HCH9g0718 549 MobiDBLite consensus disorder prediction 387 438 - -
HCH9g0718 549 Pfam Associated with HOX 152 283 IPR006563 -
HCH9g0718 549 Pfam Homeobox KN domain 334 373 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH9g0718 549 Gene3D - 320 382 - -
HCH9g0718 549 CDD homeodomain 317 378 IPR001356 GO:0003677(InterPro)
HCH9g0718 549 ProSiteProfiles 'Homeobox' domain profile. 314 377 IPR001356 GO:0003677(InterPro)
HCH9g0718 549 MobiDBLite consensus disorder prediction 451 474 - -
HCH9g0718 549 SMART prehox3 147 284 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0533 HCH-Chr5:3672278 HCH9g0718 HCH-Chr9:4783199 3.00E-46 dispersed
HCH3g1226 HCH-Chr3:45566935 HCH9g0718 HCH-Chr9:4783199 1.00E-63 transposed
HCH11g0143 HCH-Chr11:1550738 HCH9g0718 HCH-Chr9:4783199 1.70E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34163 PF07526 POX 1.00E-36 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0718 - - - 0.0