Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0727 ATGGGAGAAAAGTTGGTGGTTTTTGGTACTTTTGGAAGTCCGTTTAGTTGCAGAGTAGAATTGGCTCTGAAACTGAAAGGAATAGAATATGAATACATTCAAGAAGATTTACCTTTCAAGAAGAGTGATTTGCTTCTCAAATACAATCCCGTTTACAAGAAGGTTCCAGTGCTCATCCATGGCGGAAAACCCATTGCAGAGTCTCTCATCATCCTTGAATATATTGAAGAGAACTGGAAATCAGACTACCCCATCTTGCCTGAAGATCCCCATGAAAGAGCTGTTGCCAGATTCTGGGCTAAGCTTGTCGATGACAAGTTCCTGCCTGCGCTATCGAGAGCTGTAAAATCTGAAGGAGAAGAGAGGAAGAATGCTGAAGAAGAAGGGAGGAAGGCTCTGGAAGCACTTGAAAATGAGCTTAAAAGCAAGAGGTTCTTCGGAGGAGAAACTATTGGAATTGTGGACATTGTCGCCATCTTAATAGCGTATTGGGTTCCTATGATTCAAGAAGCTGTTGGAATAGAGATTTTGAGTGCTGAGAATTTTCCAAACTTGATGAAATGGAGTGAGGAATTTGTGAGCCAGAGTCTGGTGAAGGAGAGTCTCCCTCCTAAAGATAAGTTTATTGCACATTTGCTACTTGTTTTGGGAAAAAACAATTAG 663 41.33 MGEKLVVFGTFGSPFSCRVELALKLKGIEYEYIQEDLPFKKSDLLLKYNPVYKKVPVLIHGGKPIAESLIILEYIEENWKSDYPILPEDPHERAVARFWAKLVDDKFLPALSRAVKSEGEERKNAEEEGRKALEALENELKSKRFFGGETIGIVDIVAILIAYWVPMIQEAVGIEILSAENFPNLMKWSEEFVSQSLVKESLPPKDKFIAHLLLVLGKNN 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4846833 4847848 + evm.model.ptg000007l.727 HCH9g0727 551359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0727 220 SFLD Main.3: Omega- and Tau-like 3 212 IPR045073 -
HCH9g0727 220 Gene3D - 86 218 - -
HCH9g0727 220 Coils Coil 108 128 - -
HCH9g0727 220 SFLD Main (cytGST) 3 212 - -
HCH9g0727 220 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
HCH9g0727 220 Gene3D Glutaredoxin 1 85 - -
HCH9g0727 220 CDD GST_N_Tau 5 79 - -
HCH9g0727 220 ProSiteProfiles Glutaredoxin domain profile. 1 93 - -
HCH9g0727 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
HCH9g0727 220 FunFam Tau class glutathione S-transferase 1 88 - -
HCH9g0727 220 FunFam Tau class glutathione S-transferase 86 216 - -
HCH9g0727 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 7 211 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
HCH9g0727 220 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
HCH9g0727 220 CDD GST_C_Tau 90 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
HCH9g0727 220 SUPERFAMILY Thioredoxin-like 4 108 IPR036249 -
HCH9g0727 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 212 IPR010987 -
HCH9g0727 220 Pfam Glutathione S-transferase, C-terminal domain 98 195 IPR004046 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0727 HCH-Chr9:4846833 HCH9g0729 HCH-Chr9:4853678 3.30E-87 dispersed
HCH9g0726 HCH-Chr9:4844178 HCH9g0727 HCH-Chr9:4846833 2.80E-102 tandem
HCH9g0727 HCH-Chr9:4846833 HCH9g0728 HCH-Chr9:4849760 3.20E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0727 K00799 - csv:105434443 263.848