Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0729 ATGGCAGAAAAGTTACAGATCTTCGGAAATTCTTTAAGTCCGTTTAGCTTCCGAGTAGAATTGGCTCTGAAACTGAAAGGAATAGAATATGAATACATTAAAGAAGATTTACCTTTCAAGAAGAGTGATTTGCTTCTCAAATACAATCCCATTCACAAGAAGGTTCCAGTGCTCGTCCATGGCGGAAAACCCATCGCAGAGTCTCTCATAATCCTTGAATATATTGAAGAGAATTGGAAATCAGCCTACCCCATCTTGCCTGAAGATCCCCATGAAAGAGCTGTTGCTAGGTTCTGGGCTAAGTTTGTCGATGACAAGTGCATGCCGGCATTAAAGAAAGCAATTGGAAGTGAAGGAGAGGAGCAAGGGAAGGCGATAGAAGAGGCAATAGAGACACTGAAAGCGCTTGAAAATGAGCTGCAAAATAAGAGATTTTTTGGGGGAGATAGCATTGGATTTGTGGACATTGTTGCTAACTTCTTAGCTTTCTGGTTTCCTGCCATTGAAGAAGCTTTAGGAATAAAGCTTATAACAGCTGACAAATTTCCAAATCTGAGCAAATGGAGTAACGAATTTGTCGCCCACGATATAGTGAAGGAAACTCTGCCTCCCAAAGAGAAGCTCATTGTTGCTCTACGTGCTCATTTGACAACTCTAGCTGCCTCAAAGTGA 672 41.52 MAEKLQIFGNSLSPFSFRVELALKLKGIEYEYIKEDLPFKKSDLLLKYNPIHKKVPVLVHGGKPIAESLIILEYIEENWKSAYPILPEDPHERAVARFWAKFVDDKCMPALKKAIGSEGEEQGKAIEEAIETLKALENELQNKRFFGGDSIGFVDIVANFLAFWFPAIEEALGIKLITADKFPNLSKWSNEFVAHDIVKETLPPKEKLIVALRAHLTTLAASK 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4853678 4866191 + evm.model.ptg000007l.729 HCH9g0729 551361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0729 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
HCH9g0729 223 Gene3D Glutaredoxin 1 85 - -
HCH9g0729 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 212 IPR010987 -
HCH9g0729 223 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
HCH9g0729 223 Coils Coil 119 143 - -
HCH9g0729 223 Gene3D - 86 221 - -
HCH9g0729 223 CDD GST_N_Tau 5 79 - -
HCH9g0729 223 Pfam Glutathione S-transferase, C-terminal domain 106 195 IPR004046 -
HCH9g0729 223 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
HCH9g0729 223 CDD GST_C_Tau 90 214 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
HCH9g0729 223 SUPERFAMILY Thioredoxin-like 4 108 IPR036249 -
HCH9g0729 223 FunFam Tau class glutathione S-transferase 1 88 - -
HCH9g0729 223 SUPERFAMILY GST C-terminal domain-like 77 214 IPR036282 -
HCH9g0729 223 SFLD Main (cytGST) 2 221 - -
HCH9g0729 223 FunFam Tau class glutathione S-transferase 86 222 - -
HCH9g0729 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 212 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0055 HCH-Chr3:323978 HCH9g0729 HCH-Chr9:4853678 6.40E-49 dispersed
HCH3g0056 HCH-Chr3:325313 HCH9g0729 HCH-Chr9:4853678 7.30E-45 dispersed
HCH6g0656 HCH-Chr6:39268397 HCH9g0729 HCH-Chr9:4853678 4.20E-42 dispersed
HCH7g1514 HCH-Chr7:47689892 HCH9g0729 HCH-Chr9:4853678 2.50E-55 dispersed
HCH7g1515 HCH-Chr7:47693578 HCH9g0729 HCH-Chr9:4853678 1.10E-63 dispersed
HCH9g0727 HCH-Chr9:4846833 HCH9g0729 HCH-Chr9:4853678 3.30E-87 dispersed
HCH9g0728 HCH-Chr9:4849760 HCH9g0729 HCH-Chr9:4853678 2.00E-84 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0729 K00799 - csv:105435246 277.33