Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g0739 | ATGTCTGGAATTGATTTAGAGCAAGGGGAAGTGGGTCACCGCCGTTCCCTCACCGGAAGTGACGTGAGTGCTGATGGTCGCCGTAGCTTTTGCTTTTCCGACGCCGATGAGGGTTCGTGTCATTCTCAGTTTTTTTCGACGACGGGTGGTTCCTATGATGAACATAGGTTTGCTTTTGTGTCGGGTTCTGATTGTTGTGTTAAAGTGAAAGTAGAGAGAGATTGTCGGATTTGTCATTTGAGTTTAGAGAGTGGTGATGGAAATGGAAATGGAAATGGAAATGGTAATGAGAGTGGAATTGCTATTGAATTGGGCTGTTCTTGTAAGGATGATTTAGCTGCTGCTCATAAACAATGTGCTGAGGCTTGGTTCAAAATCAAAGGAAATAAGACCTGTGAGATCTGTCATTCTATTGCAAAAAATGTAACCGGAGCACATGATGCTGAGCCAACAGAACAATCTAATGAGTCCAATAACACCATATCAACAGCCGCGAGTGCAGCGCCTGTGGCTGCAGCTGGCGCCCGAAGCTTCTTGCAAGGTCACCGGGTTCTCAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTTATATCCTGGCTCTTCCATTTCAATATGCCATCTTAA | 627 | 44.34 | MSGIDLEQGEVGHRRSLTGSDVSADGRRSFCFSDADEGSCHSQFFSTTGGSYDEHRFAFVSGSDCCVKVKVERDCRICHLSLESGDGNGNGNGNGNESGIAIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICHSIAKNVTGAHDAEPTEQSNESNNTISTAASAAPVAAAGARSFLQGHRVLNFLLACMVFAFVISWLFHFNMPS | 208 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4955685 | 4957698 | - | evm.model.ptg000007l.739 | HCH9g0739 | 551371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g0739 | 208 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 138 | IPR013083 | - | |
| HCH9g0739 | 208 | Pfam | RING-variant domain | 92 | 135 | IPR011016 | GO:0008270(InterPro) | |
| HCH9g0739 | 208 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 67 | 142 | IPR011016 | GO:0008270(InterPro) | |
| HCH9g0739 | 208 | SUPERFAMILY | RING/U-box | 72 | 138 | - | - | |
| HCH9g0739 | 208 | PANTHER | ZINC FINGER, RING-CH-TYPE | 64 | 207 | - | - | |
| HCH9g0739 | 208 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| HCH9g0739 | 208 | SMART | ringv_2 | 74 | 136 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH14g0085 | HCH-Chr14:14960463 | HCH9g0739 | HCH-Chr9:4955685 | 3.80E-08 | dispersed | |
| HCH14g0997 | HCH-Chr14:37297334 | HCH9g0739 | HCH-Chr9:4955685 | 2.50E-19 | dispersed | |
| HCH3g1255 | HCH-Chr3:47183667 | HCH9g0739 | HCH-Chr9:4955685 | 1.20E-09 | dispersed | |
| HCH3g1416 | HCH-Chr3:52104041 | HCH9g0739 | HCH-Chr9:4955685 | 9.90E-28 | dispersed | |
| HCH11g0131 | HCH-Chr11:1452770 | HCH9g0739 | HCH-Chr9:4955685 | 2.20E-62 | wgd | |
| HCH13g0528 | HCH-Chr13:3682607 | HCH9g0739 | HCH-Chr9:4955685 | 9.90E-40 | wgd |
Pathway information