Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0750 ATGATTGTGTCCATGGACTTAAATGCCTCCCCGGTGCCCGAAGAGGATGAAGAGTTGTATGAGAGGCATAATGAGGTGTATAGTGCTCCAGAGGAACATATAGAGACTGGTGCCAGTATAGCACGTCGGGAGCGAGAAGAAAGAAAAAGGCGTTTGAAAAGAGACCGCTCTATTGAGAGACCAGTGCATGAATATCAACCACCTGCACGGGATCAGTTTTATCCTGCAAAGAACATAAAATCTGATAGAAACAGGCTTCCCCCAGGTTGGTTGGATTGCCCTGCATATGGTCAAGAAATATGTTGCATGATTCCTTCCAAGGTTCCTCTCGGTGAATCCTTTAACGATTGTATAACACCTGGTAAAAGATACTCATTTAAGCAAGTCATCCACCAGCAAAGAGTTTTGGGAAGAAAACTCGGTTTGGTGATTGACTTGTCAAATTCTTACCGTTATTATACAACTTCAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATATGTTCGTTCATGAGGTCATTCAATTCCTTTCCCGCCAAAAACAACATGCAAAGAAGTATATTCTTGTCCATTGCACACATGGCCATAATCGCACTGGATATATGATCATACATTTTCTCGTACGCGCTCACTCGTTTTCTGTTACTCAGGCAGTAAAAACGTTTTCTGATGCACGCCATCCTGGTATCTATAAGCCAGACTACATCGATGCCTTGTATGCCTTTTATCACGAAAAAAAGCCTGATATGGTTGTTTGCCCACCCACACCTGAGTGGAAGAGATCTTCTGATCTTGATCTTAATGGCGAAGCAGTTCCGGATGATGATGATGATGGGGGTTCTACCGCTCCTCTGCATGAGAATAATGATAATGCTCTAGTGATGACAAATGATGATATCTTGGGAGATGAGATACCCGATGACCAGGAGCGTGCTATGAAACAATTCTGCTACCAAATGCTTAAAATGAATGCTGGGGCAAGAGCAAATTTGCAATTCCCTGGGTCACATCCGGTATCTCTTAACAGAGACAATTTACAACTGCTGAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTACAGATGGATGTTACTTAATTGACAGGGGTTTTAAATTTCGAAGAGTCCAAATGAGGTTTCCTTACAGGAATGCTAATGATGGCTTACTTGAGAAGACCCATCACTACACGTTACTTGATGGAGAAATGATAATTGATACTGTGCCAGACTCGAAAAAGCAGGAGAGAAGATATCTTATATATGATATGATGGCAGTTAATCATGTCTCAGTCACTGAGCGTCCTTTCTATGAAAGGTGGAAAATGCTCGAGAAAGAAGTGATTGAACCTCGTAATTATGAGCGGCATAATATTTACCAAAGTAGAAATCCTCATTACAGATATGACCTGGAGCCATTCAGGGTGAGGAGGAAAGATTTTTGGCTGCTCTCTACAGTTACCAAGCTTTTGAAGGAGTTCATACCAAGGCTTTCACATGATGCCGATGGTCTAATATTCCAGGGTTGGGATGATGCTTATGTTCCTCGAACCCATGAGGGTCTTTTGAAGTGGAAATATCCTGAAATGAACTCAGTTGACTTCCTCTTTGAGTTGGGTGAAGATGATTCTCAGACTCTGCTTCTGTTCGAGCGAGGAAAGAGGAAAACAATGGATGGAAATAGGGTTAAGTTCAAAGATGATCCGGATCCCTCATTTTATTCGGGAAAGATTATAGAGTGTTCTTGGGATTCTGACGAGCAAGTGTGGGTCTGCATGCGTATCAGGACGGACAAAACAACTCCTAATGATTTCAATACTTATAAAAAGGTCATGCGCAGCATTAGAGACAATATCACAGAGGAGGATTTGTTGAAGGAGATTTATGAGATCATTCGCTTGCCCATGTATGCGGATAGGATACGGAATGATAGTAAAGCAGCCCAACATACAAATTCAACACGTCGAAGGACGCCAATTGCTATTCTATTGAATTATAGACGGATCATCATCGTCTTCGGGTTTTGGCAATTTCCTCTTTCTGGCTCTGCTTTTCAACTTGCAGAGTCTTTCAAGGTGATTTCAGTTCTTTTCATTTGCTTTATTCTATTTACTCGTTTGAAATGCAATCAAGGTGAGGAGGCCAAGAAAAACAAATTTCGGGAACGAGAAGCTACGGACGATGCCCTTGGATACCCCGAAATAGATGAGGATGCTTTGTTGAACACACAATGTCCAAGGAAGTTGGAGCTAAGATGGCAAACAGAAGTGAGTTCTAGTATATATGCCACCCCCTTGGTCGCTGATATTAACAGTGATGGAAAACTTGAAGTAGTCGTTCCATCGTTTGTTCACTACCTTGAAGTTCTAGAAGGTTCTGATGGGGATAAAATGCCAGGTTGGCCTGCTTTTCACCAGTCAACTGTGCATGCCAGTCCTCTTCTATACGATATCGACAAAGATGGTGTGAGGGAAATAGCCTTGGCAACATACAACGGCGAAGTGCTCTTTTTCAGGATATCAGGATATATGATGACAGATAAGTTAGTGATACCACGTCTCCGGGTCCGTAAGAATTGGTATGTGGATTTGAATCCAGATCCAGTGGACCGGTCTCATCCAGATGTTCATGATGACCAGCTTGTCATGGAAGCCACTAAAACAAGATCAATGTCTCAACACAATGGGAGTAGTCCAGAGTTAAACCATACAATTGAGCAGACAATGAATGGAAGTACAACTGAGCTAAATTCTTCGGCTACCATATCAACACAAGTGTTAAATGTCTCAGATATAAATAACAGTAAAGTGAATGAGAACAAAACTGAACCAGAAATTGTCCTACCTACAAGTGTGGTCAATACTTCTATAAATCATACAACAGGAGTAGATGATGTGAAGAATGGGACCAGCACAGGTAGACGACTTCTAGAAGATAATAGTTCTAAACAATCTCAAGAGGATGGTTCTGGGTCCAAGGTCAATGATAGTGGAGATATTCATGTTGCCACTGTGGAAAACGATGAAGCTTTGGAAGCAGATGCTGATTCCTCATTTGAGCTATTCCGTGAAAATGATGAGCTGGCTGATGAGTATAATTATGACTATGACGATTATGTTGATGAATCTATGTGGGGGGATGAGGAATGGACTGAACAGAAGCATGAAAAGGTGGAGGAGTATGTGAATATTGATGCACATATCTTATGCACACCTGTTATAGCTGACATTGACAATGATGGAGTATCTGAAATGATTGTAGCTGTTTCATACTTTTATGATCATGAGTACTACGACAACCCAGAGCACAAGAAAGAACTGGGTGATCTTGATATCGGGAAATATGTTGCTGGTGCCATTGTTGTATTCGATCTAGATTCAAAGCAAGTGAAATGGACAACTCAGCTGGATTTGAGTACAGATTCGGCAAATTTTCGTGCTTATATATATTCCTCCCCTACTGTTATTGATTTGGATGGTGATGGGAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTCTATATCTTGGATCATCATGGAAAGGTGAGAGAAAAATTTCCTCTTGAAATGGCTGAAATTCAAGGAGCTGTAGTTGCAGCTGATATCAACGATGATGGGAAAATTGAACTTGTAACTACTGATACACATGGAAACGTTGCTGCTTGGACTGCTCAAGGTCAAGAAATTTGGGAAACGAATCTTAAGAGTCTTGTACCACAGGGTCCATCCATTGGTGATGTTGATGGAGATGGTTATACTGATGTTGTGGTACCAACAATATCAGGAAATATATATGTTCTTAGTGGCAAGGATGGGTCATTTGTTCGTCCTTACCCCTATAGAACTCATGGAAGAGTGATGAATCCAGTTCTTCTTGTTGATTTGAGCACACGTGATGATAAAAAGAAGGGACTTACTCTAGTCACATCATCATTTGATGGGTATTTGTATGTTATAGACGGACCTACATCATGTGCTGATGTTATTGACATTGGCGAGACCTCATACAGCATGGTCTTGGCTGACAATGTTGACGGTGGAGATGATCTTGATCTTATTGTTACAACCATGAACGGAAATGTTTTCTGCTTTTCAACTCCTTCTCCCCATCACCCTCTCAAGGCATGGAAATCAACTAATCAAGGAAGAAATAATGTTGCAATCCGGCATAACCGTGAAGGTATTTATGTTTCACATTCATCTAGAGCTTTCCGTGATGAGGAAGGCAAGAACTTCTGGGTGGAGATAGAGATTGTAGACGGTTACAGATACCCGTCTGGGAATCAAGCACCATATAATGTCACTATGACCTTGTTAGTTCCTGGAAATTACCAGGGCGAGAGAAAAATCAAACAAAACCAGATCTTCCAAGAACCAGGTAAACACCGGGTAAAACTTCCGACTGTCAGCGTTAGGACTACAGGCACTGTTTTGGTGGAAATGGTTGATAAGAATGGACTCTATTTTTCGGACGAATTCTCCCTCACATTCCATATGCATTACTATAAACTCTTGAAATGGCTTCTCGTCCTCCCAATGCTTGGAATGTTTGGCGTGCTCATCATCCTTCGGCCACAAGAAGCCATGCCATTGCCATCATTTTCACGGAATACTAACCTATGA 4704 41.35 MIVSMDLNASPVPEEDEELYERHNEVYSAPEEHIETGASIARREREERKRRLKRDRSIERPVHEYQPPARDQFYPAKNIKSDRNRLPPGWLDCPAYGQEICCMIPSKVPLGESFNDCITPGKRYSFKQVIHQQRVLGRKLGLVIDLSNSYRYYTTSDLNKEGIKYVKIPCKGRDSVPDNKSVNMFVHEVIQFLSRQKQHAKKYILVHCTHGHNRTGYMIIHFLVRAHSFSVTQAVKTFSDARHPGIYKPDYIDALYAFYHEKKPDMVVCPPTPEWKRSSDLDLNGEAVPDDDDDGGSTAPLHENNDNALVMTNDDILGDEIPDDQERAMKQFCYQMLKMNAGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITTDGCYLIDRGFKFRRVQMRFPYRNANDGLLEKTHHYTLLDGEMIIDTVPDSKKQERRYLIYDMMAVNHVSVTERPFYERWKMLEKEVIEPRNYERHNIYQSRNPHYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFELGEDDSQTLLLFERGKRKTMDGNRVKFKDDPDPSFYSGKIIECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIYEIIRLPMYADRIRNDSKAAQHTNSTRRRTPIAILLNYRRIIIVFGFWQFPLSGSAFQLAESFKVISVLFICFILFTRLKCNQGEEAKKNKFREREATDDALGYPEIDEDALLNTQCPRKLELRWQTEVSSSIYATPLVADINSDGKLEVVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRISGYMMTDKLVIPRLRVRKNWYVDLNPDPVDRSHPDVHDDQLVMEATKTRSMSQHNGSSPELNHTIEQTMNGSTTELNSSATISTQVLNVSDINNSKVNENKTEPEIVLPTSVVNTSINHTTGVDDVKNGTSTGRRLLEDNSSKQSQEDGSGSKVNDSGDIHVATVENDEALEADADSSFELFRENDELADEYNYDYDDYVDESMWGDEEWTEQKHEKVEEYVNIDAHILCTPVIADIDNDGVSEMIVAVSYFYDHEYYDNPEHKKELGDLDIGKYVAGAIVVFDLDSKQVKWTTQLDLSTDSANFRAYIYSSPTVIDLDGDGNLDILVGTSFGLFYILDHHGKVREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAQGQEIWETNLKSLVPQGPSIGDVDGDGYTDVVVPTISGNIYVLSGKDGSFVRPYPYRTHGRVMNPVLLVDLSTRDDKKKGLTLVTSSFDGYLYVIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKAWKSTNQGRNNVAIRHNREGIYVSHSSRAFRDEEGKNFWVEIEIVDGYRYPSGNQAPYNVTMTLLVPGNYQGERKIKQNQIFQEPGKHRVKLPTVSVRTTGTVLVEMVDKNGLYFSDEFSLTFHMHYYKLLKWLLVLPMLGMFGVLIILRPQEAMPLPSFSRNTNL 1567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5016647 5040083 + evm.model.ptg000007l.750 HCH9g0750 551382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0750 1567 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 313 552 - -
HCH9g0750 1567 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 253 IPR000387 GO:0016311(InterPro)
HCH9g0750 1567 FunFam mRNA capping enzyme, putative 312 549 - -
HCH9g0750 1567 MobiDBLite consensus disorder prediction 279 305 - -
HCH9g0750 1567 PANTHER - 736 1556 IPR045232 -
HCH9g0750 1567 MobiDBLite consensus disorder prediction 1 62 - -
HCH9g0750 1567 Pfam mRNA capping enzyme, catalytic domain 353 551 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
HCH9g0750 1567 Gene3D DNA ligase/mRNA capping enzyme 312 549 - -
HCH9g0750 1567 CDD RNA_5'-triphosphatase 89 256 - -
HCH9g0750 1567 FunFam mRNA capping enzyme family protein 82 297 - -
HCH9g0750 1567 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311(InterPro)
HCH9g0750 1567 Pfam FG-GAP-like repeat 1228 1284 IPR013517 -
HCH9g0750 1567 SUPERFAMILY Nucleic acid-binding proteins 554 667 IPR012340 -
HCH9g0750 1567 Gene3D - 550 659 IPR012340 -
HCH9g0750 1567 Gene3D - 1002 1398 IPR015943 GO:0005515(InterPro)
HCH9g0750 1567 Pfam mRNA capping enzyme, C-terminal domain 555 650 IPR013846 -
HCH9g0750 1567 SUPERFAMILY Integrin alpha N-terminal domain 778 1321 IPR028994 -
HCH9g0750 1567 CDD Adenylation_mRNA_capping 346 552 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
HCH9g0750 1567 Pfam Dual specificity phosphatase, catalytic domain 138 259 IPR000340 GO:0016311(InterPro)
HCH9g0750 1567 MobiDBLite consensus disorder prediction 984 1018 - -
HCH9g0750 1567 MobiDBLite consensus disorder prediction 984 1023 - -
HCH9g0750 1567 Gene3D Protein tyrosine phosphatase superfamily 82 295 IPR029021 -
HCH9g0750 1567 MobiDBLite consensus disorder prediction 15 62 - -
HCH9g0750 1567 FunFam mRNA capping enzyme family protein 550 659 - -
HCH9g0750 1567 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 276 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0750 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33