Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0770 ATGGCCGCCGCCGCCGCCACATCTTCCTTCATTGGAACACGACTCCCCGATATCCGGTCAAGTTCCGGTCGAGTCCAAGCCCGGTTCTCATTTGGAAAAAAGAAAAGCCCCGCCAAGAAAAAATCAAAGCCAACTTTCGACCGGCCCCTTTGGTTCCCAGGAGCCAAAGCACCGGAATGGCTCGACGGTAGCTTGGTCGGAGATTATGGTTTTGACCCGTTTGGTTTGGGAAAGCCGGCTGAGTATTTGCAATATGAATTGGATTCTTTGGATCAGAATTTAGCTAAGAATGAGGCTGGTGATATTATAGGGACGAGATTTGAGAATTCCGACGTGAAATCGACACCGTTTCAGCCGTACACGGAGGTGTTTGGGTTGCAGAGGTTTCGTGAATGCGAGCTCATTCACGGAAGGTGGGCAATGCTGGCTACGCTTGGTGCTCTTACCGTCGAGTGGCTCACTGGCATCACCTGGCAAGATGCTGGAAAGGTAGAATTGGTGGAAGGTTCATCATACCTCGGCCAACCCCTTCCCTTCTCCATTACCTCATTGATATGGATTGAAGTTCTGGTGATCGGATACATCGAGTTTCAGCGAAACGCCGAGCTCGATCCGGAGAAGCGAATCTACCCTGGAGGCAAGTATTTCGATCCCTTAGGGTTGGCTGAAGATCCTGAGAAGAAAGCTGTCCTGCAACTAGCAGAGATCAAGCATGCCCGGCTTGCCATGGTAGGTTTCCTCGGCTTCGCCGTTCAGGCTGCTGCCACCGGGAAAGGACCTCTTAACAACTGGGCAACCCATCTCAGTGATCCACTCCATACCACCATTATTGACACTTTTTCATCATCTTAA 852 50.94 MAAAAATSSFIGTRLPDIRSSSGRVQARFSFGKKKSPAKKKSKPTFDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKNEAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITSLIWIEVLVIGYIEFQRNAELDPEKRIYPGGKYFDPLGLAEDPEKKAVLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5266398 5268388 - evm.model.ptg000007l.770 HCH9g0770 551402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0770 283 Pfam Chlorophyll A-B binding protein 57 253 IPR022796 -
HCH9g0770 283 SUPERFAMILY Chlorophyll a-b binding protein 43 281 - -
HCH9g0770 283 FunFam Chlorophyll a-b binding protein, chloroplastic 104 282 - -
HCH9g0770 283 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 277 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH9g0770 283 Gene3D Chlorophyll a/b binding protein domain 51 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0587 HCH-Chr8:42695706 HCH9g0770 HCH-Chr9:5266398 4.30E-38 dispersed
HCH4g1874 HCH-Chr4:49763631 HCH9g0770 HCH-Chr9:5266398 1.30E-26 transposed
HCH11g0096 HCH-Chr11:1192407 HCH9g0770 HCH-Chr9:5266398 3.50E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0770 K08915 - csv:101208740 517.309