Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0774 | ATGGCTTCCCAAACAGAGCCTTGGCTTTTGGAGAATGGAAACATCAAGCGTTTGACCAAAGATATGCGCCATGGACATGGAAGAACAGCCCACAACTTGTCTTCTTCTTCCTTGCGCAAAAAGTCCGATCTTACCCTCGTTTCCAGAATCCGATTTCCCTGTCTCAGGAAATTTCTCACCAATCTTCAGGAGGTTCTTTTGGGAACTAAACTTTCAGTTCTCTTTCCCGCGATTCCTTTCGCGATTATCGCTCACTATTTTCATTTTGGAAGGCCATGGGTTTTTGCATTGAGCTTGCTTGGCCTCACCCCATTGGCCGAACGCGTCAGCTTTCTAACTGAACAAATAGCCTACTTCACCAGTCCGACAGTTGGAGGGCTTTTGAATGCAACATGTGGAAATGCAACAGAGCTGATAATTGGAATACTAGCGCTCTCCCAACACAAGATTGATGTTGTCAAGTATTCTCTTTTGGGTTCTGTTCTCTCAAACCTTCTTCTTGTCCTTGGAACCTCTCTCTTCTGCGGTGGCATTGCAAATATTCGATTTGAGCAGAAATATGACCGGAGACAAGCCGATGTTAACGCGCTCATGTTGATGCTGTCATTGTTGTGCCACCTATTGCCATTATTGTTCGGCTATGCCGCCTCCGCCTCCTCCTCCGCCACTGCCGCGGCGTCCACTCTCCATTTGTCAAGAGCTAGCAGTATCGTTATGCTTGCTGCGTACATTGCTTACTTGGTCTTTCAGCTTTGTACTCACCGTTCGTTATTTGAAGCTGAAGAGGATTCTGAGGACGGCGACGATTCGAAAGAAGAGGCGACGATCGGATTCTGGAGTGCATTTGCATGGCTGGTAGGAATGACACTTGTCATTGCTTTGCTATCGGAATACGTCGTCAATACAATAGAGGAAGCATCAAGTACTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATTGTTGGAAATGCAGCTGAGCATGCTGGAGCAGTCATTTTTGCTTTCAAGAACAAATTGGACATATCTTTGGGAGTTGCTTTGGGATCTGCAACTCAAATTGCACTCTTTGCAATTCCACTATGTGTGATAGTGGCATGGACAATGGGAGTGGATATGGATCTGAATTTCAATCTAATGGAAACTGGATCTCTTGGATTAGCGATCATAGCCACTGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTTCTTTGCTATATTATCATTGCTGCTTGCTTCTTTGTTTCCAACACACAGCCAAATGATAATAATGTCCACAACTTGGGATCTCAATCTTTCAATCAAGCAGCCTTTACAGCTTAA | 1353 | 44.64 | MASQTEPWLLENGNIKRLTKDMRHGHGRTAHNLSSSSLRKKSDLTLVSRIRFPCLRKFLTNLQEVLLGTKLSVLFPAIPFAIIAHYFHFGRPWVFALSLLGLTPLAERVSFLTEQIAYFTSPTVGGLLNATCGNATELIIGILALSQHKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANIRFEQKYDRRQADVNALMLMLSLLCHLLPLLFGYAASASSSATAAASTLHLSRASSIVMLAAYIAYLVFQLCTHRSLFEAEEDSEDGDDSKEEATIGFWSAFAWLVGMTLVIALLSEYVVNTIEEASSTWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIALFAIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSNTQPNDNNVHNLGSQSFNQAAFTA | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5290648 | 5295260 | - | evm.model.ptg000007l.774 | HCH9g0774 | 551406 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0774 | 450 | FunFam | Vacuolar cation/proton exchanger | 122 | 268 | - | - | |
HCH9g0774 | 450 | FunFam | Vacuolar cation/proton exchanger | 269 | 425 | - | - | |
HCH9g0774 | 450 | NCBIfam | calcium/proton exchanger | 76 | 424 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
HCH9g0774 | 450 | Gene3D | - | 121 | 264 | IPR044880 | - | |
HCH9g0774 | 450 | Gene3D | - | 269 | 425 | IPR044880 | - | |
HCH9g0774 | 450 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 21 | 428 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
HCH9g0774 | 450 | Pfam | Sodium/calcium exchanger protein | 281 | 424 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0774 | 450 | Pfam | Sodium/calcium exchanger protein | 93 | 251 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g1442 | HCH-Chr3:52369575 | HCH9g0774 | HCH-Chr9:5290648 | 1.10E-124 | dispersed | |
HCH6g0027 | HCH-Chr6:437090 | HCH9g0774 | HCH-Chr9:5290648 | 1.10E-91 | transposed | |
HCH6g0909 | HCH-Chr6:43853292 | HCH9g0774 | HCH-Chr9:5290648 | 1.80E-91 | transposed | |
HCH11g0094 | HCH-Chr11:1180591 | HCH9g0774 | HCH-Chr9:5290648 | 3.00E-154 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0774 | K07300 | - | csv:101213857 | 710.294 |