Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0774 ATGGCTTCCCAAACAGAGCCTTGGCTTTTGGAGAATGGAAACATCAAGCGTTTGACCAAAGATATGCGCCATGGACATGGAAGAACAGCCCACAACTTGTCTTCTTCTTCCTTGCGCAAAAAGTCCGATCTTACCCTCGTTTCCAGAATCCGATTTCCCTGTCTCAGGAAATTTCTCACCAATCTTCAGGAGGTTCTTTTGGGAACTAAACTTTCAGTTCTCTTTCCCGCGATTCCTTTCGCGATTATCGCTCACTATTTTCATTTTGGAAGGCCATGGGTTTTTGCATTGAGCTTGCTTGGCCTCACCCCATTGGCCGAACGCGTCAGCTTTCTAACTGAACAAATAGCCTACTTCACCAGTCCGACAGTTGGAGGGCTTTTGAATGCAACATGTGGAAATGCAACAGAGCTGATAATTGGAATACTAGCGCTCTCCCAACACAAGATTGATGTTGTCAAGTATTCTCTTTTGGGTTCTGTTCTCTCAAACCTTCTTCTTGTCCTTGGAACCTCTCTCTTCTGCGGTGGCATTGCAAATATTCGATTTGAGCAGAAATATGACCGGAGACAAGCCGATGTTAACGCGCTCATGTTGATGCTGTCATTGTTGTGCCACCTATTGCCATTATTGTTCGGCTATGCCGCCTCCGCCTCCTCCTCCGCCACTGCCGCGGCGTCCACTCTCCATTTGTCAAGAGCTAGCAGTATCGTTATGCTTGCTGCGTACATTGCTTACTTGGTCTTTCAGCTTTGTACTCACCGTTCGTTATTTGAAGCTGAAGAGGATTCTGAGGACGGCGACGATTCGAAAGAAGAGGCGACGATCGGATTCTGGAGTGCATTTGCATGGCTGGTAGGAATGACACTTGTCATTGCTTTGCTATCGGAATACGTCGTCAATACAATAGAGGAAGCATCAAGTACTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATTGTTGGAAATGCAGCTGAGCATGCTGGAGCAGTCATTTTTGCTTTCAAGAACAAATTGGACATATCTTTGGGAGTTGCTTTGGGATCTGCAACTCAAATTGCACTCTTTGCAATTCCACTATGTGTGATAGTGGCATGGACAATGGGAGTGGATATGGATCTGAATTTCAATCTAATGGAAACTGGATCTCTTGGATTAGCGATCATAGCCACTGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTTCTTTGCTATATTATCATTGCTGCTTGCTTCTTTGTTTCCAACACACAGCCAAATGATAATAATGTCCACAACTTGGGATCTCAATCTTTCAATCAAGCAGCCTTTACAGCTTAA 1353 44.64 MASQTEPWLLENGNIKRLTKDMRHGHGRTAHNLSSSSLRKKSDLTLVSRIRFPCLRKFLTNLQEVLLGTKLSVLFPAIPFAIIAHYFHFGRPWVFALSLLGLTPLAERVSFLTEQIAYFTSPTVGGLLNATCGNATELIIGILALSQHKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANIRFEQKYDRRQADVNALMLMLSLLCHLLPLLFGYAASASSSATAAASTLHLSRASSIVMLAAYIAYLVFQLCTHRSLFEAEEDSEDGDDSKEEATIGFWSAFAWLVGMTLVIALLSEYVVNTIEEASSTWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIALFAIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSNTQPNDNNVHNLGSQSFNQAAFTA 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5290648 5295260 - evm.model.ptg000007l.774 HCH9g0774 551406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0774 450 FunFam Vacuolar cation/proton exchanger 122 268 - -
HCH9g0774 450 FunFam Vacuolar cation/proton exchanger 269 425 - -
HCH9g0774 450 NCBIfam calcium/proton exchanger 76 424 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
HCH9g0774 450 Gene3D - 121 264 IPR044880 -
HCH9g0774 450 Gene3D - 269 425 IPR044880 -
HCH9g0774 450 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 21 428 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
HCH9g0774 450 Pfam Sodium/calcium exchanger protein 281 424 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0774 450 Pfam Sodium/calcium exchanger protein 93 251 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1442 HCH-Chr3:52369575 HCH9g0774 HCH-Chr9:5290648 1.10E-124 dispersed
HCH6g0027 HCH-Chr6:437090 HCH9g0774 HCH-Chr9:5290648 1.10E-91 transposed
HCH6g0909 HCH-Chr6:43853292 HCH9g0774 HCH-Chr9:5290648 1.80E-91 transposed
HCH11g0094 HCH-Chr11:1180591 HCH9g0774 HCH-Chr9:5290648 3.00E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0774 K07300 - csv:101213857 710.294