Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0795 ATGGCCGCAGCCACAAACACAACAACAGACACCTCCCCAGAATTCCATCCTGATTTCCATCACGAAATCTCAATTCCGCCGCCGACCCACGACGGACTTTACTTCTCTCAGTTCATGATCGCCGGCTCACTCGCCGGCTGCATCGAACACATAGCCATGTTCCCAATCGACACTCTCAAAACCCGAATGCAGACCCTTCACGGAACTCCGTTTCAACCCATCGGAGTCCGACAAGCACTCAGCTCAATCCTAAAGGTCGAAGGCCCCGCCGGCCTCTACCGCGGCATCGGAGCAATGGGTCTGGGAGCCGGGCCGTCACACGCCGTATACTTCTCAGTATATGAATTATGCAAAGAAGTTTTCTCTCATGGGAATCCGAACAGTCCGTTAACTCACGCCGTTTCCGGCGTGTGTGCAACGGTGGCGAGTGACGCCGTAATAACGCCGATGGATGTTGTGAAACAGAGGTTGCAATTGAGGAGTAGTCCATATAAAGGAGTGGGCGATTGCGTGAGAAAAATGTTGGTGGAAGAAGGGATTGGAGCGTTTTATGTGTCTTATAGAACTACGGTTTTGATGAATGCGCCGTTCACGGCGGTTCATTTTGCTACTTATGAAGCTGTGAAAAGGGGTTTGACGGAAGTTTCGCCGGAGAGTGGGAATGGTAAGAGGTGGGTTGTTCATGCGACGGCGGGTGCGGCTGCTGGTGGTTTAGCTGCTGCTTTGACGACGCCGTTGGATGTGGTGAAAACTCAGTTGCAGTGCCAGGGAGTGTGTGGTTGTGACAGATTTTCAAGCAGCTCAATTGGGCATGTAATTAAGTGTGTGGTAAAGAAGGAAGGGTATAATGGATTGATGAGGGGATGGATTCCAAGGATATTGTTCCATGCTCCTGCTGCTGCAATTTCTTGGTCTACTTATGAAGCAGCAAAAACCTTCTTTCAACAACGACATTACAACAACTAG 966 50.31 MAAATNTTTDTSPEFHPDFHHEISIPPPTHDGLYFSQFMIAGSLAGCIEHIAMFPIDTLKTRMQTLHGTPFQPIGVRQALSSILKVEGPAGLYRGIGAMGLGAGPSHAVYFSVYELCKEVFSHGNPNSPLTHAVSGVCATVASDAVITPMDVVKQRLQLRSSPYKGVGDCVRKMLVEEGIGAFYVSYRTTVLMNAPFTAVHFATYEAVKRGLTEVSPESGNGKRWVVHATAGAAAGGLAAALTTPLDVVKTQLQCQGVCGCDRFSSSSIGHVIKCVVKKEGYNGLMRGWIPRILFHAPAAAISWSTYEAAKTFFQQRHYNN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5508358 5509648 + evm.model.ptg000007l.795 HCH9g0795 551427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0795 321 Gene3D Mitochondrial carrier domain 15 187 IPR023395 -
HCH9g0795 321 FunFam Mitochondrial RNA-splicing protein MRS3 162 321 - -
HCH9g0795 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 211 IPR018108 -
HCH9g0795 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 223 313 IPR018108 -
HCH9g0795 321 MobiDBLite consensus disorder prediction 1 22 - -
HCH9g0795 321 Pfam Mitochondrial carrier protein 35 123 IPR018108 -
HCH9g0795 321 Pfam Mitochondrial carrier protein 224 317 IPR018108 -
HCH9g0795 321 Pfam Mitochondrial carrier protein 127 214 IPR018108 -
HCH9g0795 321 SUPERFAMILY Mitochondrial carrier 32 308 IPR023395 -
HCH9g0795 321 Gene3D Mitochondrial carrier domain 188 321 IPR023395 -
HCH9g0795 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 33 120 IPR018108 -
HCH9g0795 321 PANTHER MITOFERRIN-1-RELATED 28 317 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0996 HCH-Chr2:53235588 HCH9g0795 HCH-Chr9:5508358 3.90E-129 dispersed
HCH9g0773 HCH-Chr9:5280790 HCH9g0795 HCH-Chr9:5508358 1.10E-21 dispersed
HCH9g0795 HCH-Chr9:5508358 HCH13g0668 HCH-Chr13:5330930 1.80E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0795 K15113 - mdm:103450696 473.781