Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0809 ATGGGAGCCTGTTGTTCCAAAGTTGACATCTCTGGCAGGTATATAACACGTGAAAAGGACGATAGGGATTCGAATGCCGGTGACGATGAAGAGACGGTTCGATACGGAGATTCCGGTGCCATTGTTAGACTCCATGGATCATCTGCATTCACATCAATGTATACACAACGAGGAAGAAAAGGAATCAATCAAGATGCAATGACAGTTTGGGAGGACTTCACAGGGGGGAAAGATGTGATGTTTTGTGGAGTTTTTGATGGTCATGGTCCATATGGTCATAGGGTGGCTCGCCATGCACGTGACATGCTACCTTCAAAGCTCTCGAAGGCGATCAAGCAGCAGATGTCTCAGCTTAATGGCCGTGAAAATGGGGTCTCTCAAGCTTCTGTTGAAACAGAGAGCGATGCCACCCACGACGATTTGCTGCTTTCCCGGTGGGAAACTGCTTTTGTTGAATCTTTCAGAGATATGGACCGAGAACTTCGATTCGATTCGACTATCGATAGCTTTTGCAGTGGATCAACAGCCGTGACCGTCATGAAACAGGGAGAGCATTTGGTTGTTGCTAACTTGGGAGACTCCCGGGCGGTTCTCTGCACCAGAGGAGACAGGAATCAATATCTTCCTCTCCAACTAACAGTGGACCAAAAACCAAACATTCCAAGTGAAGCAGAAAGAATAAAGAATCGTCAGGGTAGAATTATTCCAGACAGAGAAGATCCAGATGTGTACAGGATATGGATGCCTGATGAAGATTACCCTGGTCTTGCTATGTCAAGATCTTTTGGAGATTTTTGCCTCAAAGATTATGGGCTCATTTCAATCCCTCTTCTCTCTTACAGAAGACTTACAAGGAGAGATGAATTCATAGTTTTAGCAACAGATGGGATATGGGATGTGCTAACAAACAAGCAAGTAGTGACCATAGTTGCTTCAACAAGAAACCGATCAATGGCAGCAAAACTAGTGGTAAAACTAGCAGTTCGAGAATGGAAACGTAGATTCCCAGGCTCAGTCATCGACGATTGCGCAGTCATTTGCCTCTTCTTTAAAAACTCACCAATGCTAACCAAATCCATGACCACCATGACTCGTCACCATATGAGAAACCATCCAGACCTCACCGTTTCACGAAGCTATAGATCCATGGGCGCTGGCGCTGGGAAGAAAGAAGAAGTTTCTGGATCTAGGAATGCGGGAAAATCAAGAGAAGAAAACAAGGGTTTACGAGGATTAGGAAGGATCAATTCGTTGCCGCAGCTTCAGAGATTGGCTCGAGCTCTGAGTACTCAGCGAAAGGAGAAGAATCTGCGAGAAGTTGAAAGCACGCGAGGTGTTTGA 1341 45.56 MGACCSKVDISGRYITREKDDRDSNAGDDEETVRYGDSGAIVRLHGSSAFTSMYTQRGRKGINQDAMTVWEDFTGGKDVMFCGVFDGHGPYGHRVARHARDMLPSKLSKAIKQQMSQLNGRENGVSQASVETESDATHDDLLLSRWETAFVESFRDMDRELRFDSTIDSFCSGSTAVTVMKQGEHLVVANLGDSRAVLCTRGDRNQYLPLQLTVDQKPNIPSEAERIKNRQGRIIPDREDPDVYRIWMPDEDYPGLAMSRSFGDFCLKDYGLISIPLLSYRRLTRRDEFIVLATDGIWDVLTNKQVVTIVASTRNRSMAAKLVVKLAVREWKRRFPGSVIDDCAVICLFFKNSPMLTKSMTTMTRHHMRNHPDLTVSRSYRSMGAGAGKKEEVSGSRNAGKSREENKGLRGLGRINSLPQLQRLARALSTQRKEKNLREVESTRGV 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5595394 5597506 - evm.model.ptg000007l.809 HCH9g0809 551441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0809 446 Pfam Protein phosphatase 2C 79 328 IPR001932 -
HCH9g0809 446 CDD PP2Cc 52 350 IPR001932 -
HCH9g0809 446 ProSiteProfiles PPM-type phosphatase domain profile. 50 350 IPR001932 -
HCH9g0809 446 PANTHER PROTEIN PHOSPHATASE 34 349 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH9g0809 446 MobiDBLite consensus disorder prediction 428 446 - -
HCH9g0809 446 SUPERFAMILY PP2C-like 49 352 IPR036457 -
HCH9g0809 446 Gene3D - 43 353 IPR036457 -
HCH9g0809 446 MobiDBLite consensus disorder prediction 394 410 - -
HCH9g0809 446 SMART PP2C_4 39 348 IPR001932 -
HCH9g0809 446 MobiDBLite consensus disorder prediction 385 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0281 HCH-Chr8:15645117 HCH9g0809 HCH-Chr9:5595394 2.30E-88 dispersed
HCH8g0706 HCH-Chr8:43775944 HCH9g0809 HCH-Chr9:5595394 1.50E-24 dispersed
HCH9g0809 HCH-Chr9:5595394 HCH9g1262 HCH-Chr9:35875538 1.80E-12 dispersed
HCH9g0809 HCH-Chr9:5595394 HCH7g0165 HCH-Chr7:1106621 9.60E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0809 - - - 0.0