Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0825 ATGGATAACAAAGGGGCTGTCTTGATGCAACGGTATGAATTAGGAAGGCTTTTGGGACAGGGAACCTTTGCTAAGGTGTACTATGCAAGAGACATCAAAAGTGGCTTAGGTGTGGCCATTAAAATTATTGACAAAGAAAAGGTCTTAAAGGGCGGAATGATTGATCAAATCAAAAGAGAAATCTCTGTCATGAGACTGATTAAACATCCTAACGTGGTTGAGCTTTATGAGGTAATGGCAAGCAAAACTAAAATTTACTTTGTTATGGAATGTGCTAAAGGTGGTGAGCTATTCAACAAGGTGTGCAAAGGAAAGCTTAAAGACGCCGTTGCCCGCAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTACTGCCACAGTAGAGGGGTGTGCCACCGGGACTTGAAGCCAGAAAACTTACTATTGGATGAATACGGCAATCTTAAGGTCTCGGATTTTGGGTTGAGCGCTCTCGCGGAATCTAAACACCAAGATGGATTACTCCATACTACCTGTGGGACACCTGCTTATGTTGCTCCTGAAGTCATTAATAGAAAAGGATATGATGGATGCAAATCTGATATTTGGTCATGTGGGGTGATCCTGTTTGTTCTTTTGGCTGGTTATCTTCCATTCCACGATACAAATCTAATGGAGATGTATAGGAAGATTGGAAGGGGAGAATACAAATTCCCAAACTGGTTTACACCAGAGGTGCGCAAGTTATTGTCAAAGATCTTGGATCCTAACCCAAATACCAGGATATCTATAGGTAGAATAATGGAAAGCTCTTGGTTAAGAAAGGGGTTAGACGTGAAACCCGAAATTAATGCAGAAGAAGTGAAAGAAATTTGTTCTTTGGATGTTGATGCAGTTTGCAAGTCTATTGAGGACAGAGATTCAATTAGAGATTCCAAGAAACAAGAAGTTGAAAAACCATCAAATTTGAATGCTTTTGACATAATTTCCTTGTCGGCAGGTTTCGATTTGTCTGGTTTATTTGAGGAGACTGATCAAAAGAAAGAAGTGAGATTCACATCTGACAAGCCTTCCTCTACTATCATTTCCAAGCTGGAAGAAATTGCGAAGCGCTTTAGATTGAAAGTCACGAAGAAAGATCGAGGTCGATTGAAGATCGAAGGTAGTAAGCAAGGTAGGAAAGGAGTCTTATGTGTCGATGCTGAGATTTTTGAGGTTACTCCATCATTCCACATGGTGGAAATGAAGAAATCAAGTGGAGATACTATGGAATACCGGAAGATAATGAAAGAGGACATAAGACCCGCACTCAACGACATCGTTTGGACTTGGCAAGGAGAGAAGCTAAACTCACAACCAGGCCGAGAAGGGCAATTGCAGTTGGTGGAAGCATCTTAG 1377 41.03 MDNKGAVLMQRYELGRLLGQGTFAKVYYARDIKSGLGVAIKIIDKEKVLKGGMIDQIKREISVMRLIKHPNVVELYEVMASKTKIYFVMECAKGGELFNKVCKGKLKDAVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEYGNLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRKGYDGCKSDIWSCGVILFVLLAGYLPFHDTNLMEMYRKIGRGEYKFPNWFTPEVRKLLSKILDPNPNTRISIGRIMESSWLRKGLDVKPEINAEEVKEICSLDVDAVCKSIEDRDSIRDSKKQEVEKPSNLNAFDIISLSAGFDLSGLFEETDQKKEVRFTSDKPSSTIISKLEEIAKRFRLKVTKKDRGRLKIEGSKQGRKGVLCVDAEIFEVTPSFHMVEMKKSSGDTMEYRKIMKEDIRPALNDIVWTWQGEKLNSQPGREGQLQLVEAS 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5774557 5775933 + evm.model.ptg000007l.825 HCH9g0825 551457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0825 458 FunFam Non-specific serine/threonine protein kinase 3 91 - -
HCH9g0825 458 Gene3D Transferase(Phosphotransferase) domain 1 92 272 - -
HCH9g0825 458 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0825 458 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0825 458 CDD CIPK_C 317 431 - -
HCH9g0825 458 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
HCH9g0825 458 FunFam Non-specific serine/threonine protein kinase 311 435 - -
HCH9g0825 458 FunFam Non-specific serine/threonine protein kinase 2 301 - -
HCH9g0825 458 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
HCH9g0825 458 Pfam NAF domain 313 371 IPR004041 GO:0007165(InterPro)
HCH9g0825 458 Gene3D Kinase associated domain 1, KA1 310 436 - -
HCH9g0825 458 CDD STKc_SnRK3 11 265 - -
HCH9g0825 458 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0825 458 SUPERFAMILY Protein kinase-like (PK-like) 8 278 IPR011009 -
HCH9g0825 458 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 424 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH9g0825 458 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
HCH9g0825 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0994 HCH-Chr14:37275107 HCH9g0825 HCH-Chr9:5774557 3.10E-143 dispersed
HCH2g0984 HCH-Chr2:53126364 HCH9g0825 HCH-Chr9:5774557 4.40E-156 dispersed
HCH3g0713 HCH-Chr3:5105713 HCH9g0825 HCH-Chr9:5774557 3.80E-175 dispersed
HCH6g0291 HCH-Chr6:4133601 HCH9g0825 HCH-Chr9:5774557 3.40E-128 dispersed
HCH6g1548 HCH-Chr6:48864907 HCH9g0825 HCH-Chr9:5774557 9.20E-102 dispersed
HCH7g1559 HCH-Chr7:48043213 HCH9g0825 HCH-Chr9:5774557 4.30E-47 dispersed
HCH8g0693 HCH-Chr8:43650420 HCH9g0825 HCH-Chr9:5774557 3.10E-06 dispersed
HCH8g0843 HCH-Chr8:44916979 HCH9g0825 HCH-Chr9:5774557 3.30E-110 dispersed
HCH8g0925 HCH-Chr8:45556791 HCH9g0825 HCH-Chr9:5774557 6.60E-145 dispersed
HCH9g0825 HCH-Chr9:5774557 HCH5g0467 HCH-Chr5:3160906 2.80E-40 dispersed
HCH9g0825 HCH-Chr9:5774557 HCH9g0827 HCH-Chr9:5800530 1.10E-108 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81767 PF00069 Pkinase 2.30E-72 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0825 K07198 - csv:116406388 746.117