Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0827 ATGCCGGCCGTTGAGGAGAATCCACGACATATTCGCTCCGTCGACGGCGACGGAGAGAGGCCGCCGGAGTTAACCCTGTTCGGGAAATACGAGCTCGGGAAATTACTCGGCCGTGGAGCCTTCGCGAAGGTATACCACGCGCGAAACGTGGTGACAGGACAGAGCGTGGCGATTAAATCCGTCAACAAACAGAAGGTTCTCAAGGCTGGTCTGATGGCGCAGGTTAAGCGCGAGATCTCTATCATGCGCCGGCTGCGTCACCCTCATGTCGTCCGATTATTTGAAGTCCTCGCCACGAAGACGAGGATTTATTTGGTGATGGAGTTCGCGAAAGGCGGCGAGTTATTCGCGAGGATTTCGAAAGGAAGGTTCAGCGAAGATCTCAGCCGTCGATACTTCCAGCAGTTAATCACCGCCGTTGGATACTGTCATTCAAAAGGAATCTTCCACCGTGATTTGAAACCGGAGAATCTTCTCCTAGACGACAATTTCGATCTCCGGATCACGGATTTCGGACTCAGCGCATTCTCGGATCAAAACCGACCCGACGGGTTGCTCCATACTCAATGCGGCACACCCGCTTACGTGGCACCGGAAATTCTCGCGAAGAAAGGCTACGACGGTGCAAAAATCGACGTGTGGTCCTGCGGCGTAATCCTCTACGTACTCAACACTGGATACCTCCCCTTCAATGACCCGAATCTCATGGTGATGTATAAGAAGATTTATCGGGGAGAATTCCGGTGCCCCAAGTGGATCTCACCGGAGCTCCGTCGGTTTTTAACCCGACTTCTTGACACCAACCCTGGAACAAGAATTACCGTCGATGAGATTCTTCACGATCCCTGGTTTAAATTAGGGTTTCAAGAAGAGAAGCCGCCGGTTGAGCTTCACGATTCCGATTGCGCTCCGGCTTTATTCGGAGAAGAGAGTAATGGAAAATGCTTGAATGCTTTTGATTTGATATCCTTTTCTCCCGGGTTTGATTTGACGGGTCTGATTAACGAGACGGAAGTTAGGTCTAATGTAGAGAGGTTTCTGTCCGCCGCTGCGGTGGAGAAGATAATCGAGAAAGTTGAAGAGGTTTCGGTTTCGGTTTCGGTGACGGAGAATTTGACGGTGGAGAAGAATGGATGGGGGGTTAAAGTGGAGGATCAAGAAGGGGCCTTTTTGGCTATTATTGAGATTTTCCGTTTAACGGAAAAGTTGGTGATTGTGGAGATGAAGACGATGGAGAAGGAAGGAGAGCATGAACATTTTATTTGGAAAGATAAGATAAGACCGCAGCTTGAATTGTTAATTGATCGATCGGTTTCTGCGGTTTAA 1326 49.55 MPAVEENPRHIRSVDGDGERPPELTLFGKYELGKLLGRGAFAKVYHARNVVTGQSVAIKSVNKQKVLKAGLMAQVKREISIMRRLRHPHVVRLFEVLATKTRIYLVMEFAKGGELFARISKGRFSEDLSRRYFQQLITAVGYCHSKGIFHRDLKPENLLLDDNFDLRITDFGLSAFSDQNRPDGLLHTQCGTPAYVAPEILAKKGYDGAKIDVWSCGVILYVLNTGYLPFNDPNLMVMYKKIYRGEFRCPKWISPELRRFLTRLLDTNPGTRITVDEILHDPWFKLGFQEEKPPVELHDSDCAPALFGEESNGKCLNAFDLISFSPGFDLTGLINETEVRSNVERFLSAAAVEKIIEKVEEVSVSVSVTENLTVEKNGWGVKVEDQEGAFLAIIEIFRLTEKLVIVEMKTMEKEGEHEHFIWKDKIRPQLELLIDRSVSAV 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5800530 5801855 - evm.model.ptg000007l.827 HCH9g0827 551459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0827 441 SMART serkin_6 30 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0827 441 FunFam Non-specific serine/threonine protein kinase 21 306 - -
HCH9g0827 441 Gene3D Kinase associated domain 1, KA1 315 435 - -
HCH9g0827 441 FunFam Non-specific serine/threonine protein kinase 22 109 - -
HCH9g0827 441 Pfam NAF domain 315 365 IPR004041 GO:0007165(InterPro)
HCH9g0827 441 CDD CIPK_C 317 430 - -
HCH9g0827 441 ProSiteProfiles Protein kinase domain profile. 30 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0827 441 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
HCH9g0827 441 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524(InterPro)
HCH9g0827 441 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH9g0827 441 Gene3D Transferase(Phosphotransferase) domain 1 23 314 - -
HCH9g0827 441 SUPERFAMILY Protein kinase-like (PK-like) 27 285 IPR011009 -
HCH9g0827 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0827 441 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0983 HCH-Chr2:53113937 HCH9g0827 HCH-Chr9:5800530 4.60E-141 dispersed
HCH9g0261 HCH-Chr9:1629552 HCH9g0827 HCH-Chr9:5800530 9.70E-66 dispersed
HCH9g0825 HCH-Chr9:5774557 HCH9g0827 HCH-Chr9:5800530 1.10E-108 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81768 PF00069 Pkinase 1.40E-73 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0827 - - - 0.0