Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0828 ATGGCGGTTTCTCCCCAATCTTTTCCACCAAGAAAACGCCGCCCATCGGCAGCATCATTCGTATCGCCAAAACTCTCCGGTCGCATCCTCATCGAATCCCTCCTCCTCCTCTGTCACGAAATCTCCTCCATGAAACCTCTTCAATTTCTCCTCAAACGATATTCCCTTTCATTAATTCGCAAATCCCGATTACTAGAGATCTTTCTAGAAGACCTTCTTCGCAACAAAAACATCTCCCTTTCCACGTCGTCGTCGGCCGGTCTCTGCCTCGAAGAATTGTTCATCGTTTTACAACGAATCAAAACATTGATCGAAGATTGCTCCAACGGAAGCAAGATTTGGCTTTTGATGCAAAACCAATCCGTCGCCAATAATTTCCACGAACTCACTTTGGATTTATCGACTCTTCTCGATATTTTTCCCGTCGGAGATTTCATTGATATATCCGAAGACGTTCAAGATTTGTTTTTCTTTCTCAAAAAGCAATGCTCCGAATCCGACGCTTTTGTCGATCCTAGAGACGAGAATCTTCGCTGTCGTGTTTTGAAAATCATCGATCGGATCAGAGACGAAATCGTCCCAGACTGTACGGAACTCTCGGAGATTTTTTCCAAGCTTGATATTTTCGATTCTTCTAGCTGCAGAGAGGAGATTGAGAATTTAGAAGACGAAATTCATAATCAAACAGACGAGAAATCGAAATCTGATTTGATTGCTCTGATCGGATTCGTTCGGTACGGGAAATGCGTTTTGTTCGGAGCTTCAACGCCGGGAATTGAGAATTCTCAGAAGAACTCGTTCTCCGAAGTGGATTTTCCGGCGGATTTTAGATGCCCGGTGAGTCTTGATTTAATGATGGATCCTGTTGTCGTGGCGACAGGACATACGTACGATCGTTCTTCGATAACGTTGTGGATTGAATCAGGTCACAACACGTGTCCCAAGACAGGTCAGATCCTGGCCCACACGAACCTAATTCCAAACCAAGCTTTGAAAAACATGATAGCGATGTGGTGCCGTCAGGAGAAAATTCCCTTCAACTTAACGGCGGAGAATAAAGATAAAGTCAAAACAGACGGCGTTACGTTAAATAAAGCAGCGTTAGAAGCCATGAGAATGACGGCGTCTTTCCTCGTTAACAAACTCGCCACGTCATCATCAATAGAAGATGCGAACGGCGTCGTTTACGAACTTCGCGTCTTAGCCAAGACGGATTCCAGCAGCCGTGGCTGCATCGCTCATGCCGGCGCGCTGCCGTTACTTCTCCGTTACTTAAATTCAGAAAGCCCGAGCCTCCAAGTTAACGCCGTCACGACGATTCTCAATCTTTCCCTTTTCGAACCCAACAAGACACTGATTGTGGAAACTGATGGTTCTTTATTCGGAGTAATCGAGGTTCTTCGCTCCGGTGCCACGTGGGAAGCAAAAGGAAACGCCGCCGCCACGATATTTAGCCTCTCCGCCGTACACTCTTACCGGAGAAAACTAGGGAGGAAGTCACGTGTCATTAAAGGATTGCTTGAGTTAGCCAAAGACGGTCCGATAAATTCAAAGCGAGACGCGTTATTGACGATTTTAACGTTGGCGGGAGATCGGGAGACGGTGGGGCGATTAATTGAAGGAGGAATAATGGAAACGGTCAGCAATCTGATGACCGAGCTGCCCGAGGAGACGGTGGCGATATTAGAAGTAGTGGTTAGGAAAGGGGGATTTGTGGGGATTGCTTCAGCTTATTACGTGATTAGGAAATTGGGATTGGTATTAAGGGAAGGATCAGATAGAGCGAGAGAGAGTGCTGCGGCGGCGCTCGTTACAATGTGCCGACAAGGTGGGTCGGAAATGGTGTCGGAATTGGCGGCGATGGCGGGGATTGAGAGAGTTGTGTGGGAGTTAATGGGAAGTGGGACGATGAGAGGGCGGAGGAAGGCGGCGTCGTTGTTGAGAATATTGCGGCGGTGGGCGGCGGGGTTGGATGGGATCGGAATGGGTGGAGATTCTACTACTATTGTGAGTTCATCAAGAGCAATTGTGCATAGTTAG 2040 47.45 MAVSPQSFPPRKRRPSAASFVSPKLSGRILIESLLLLCHEISSMKPLQFLLKRYSLSLIRKSRLLEIFLEDLLRNKNISLSTSSSAGLCLEELFIVLQRIKTLIEDCSNGSKIWLLMQNQSVANNFHELTLDLSTLLDIFPVGDFIDISEDVQDLFFFLKKQCSESDAFVDPRDENLRCRVLKIIDRIRDEIVPDCTELSEIFSKLDIFDSSSCREEIENLEDEIHNQTDEKSKSDLIALIGFVRYGKCVLFGASTPGIENSQKNSFSEVDFPADFRCPVSLDLMMDPVVVATGHTYDRSSITLWIESGHNTCPKTGQILAHTNLIPNQALKNMIAMWCRQEKIPFNLTAENKDKVKTDGVTLNKAALEAMRMTASFLVNKLATSSSIEDANGVVYELRVLAKTDSSSRGCIAHAGALPLLLRYLNSESPSLQVNAVTTILNLSLFEPNKTLIVETDGSLFGVIEVLRSGATWEAKGNAAATIFSLSAVHSYRRKLGRKSRVIKGLLELAKDGPINSKRDALLTILTLAGDRETVGRLIEGGIMETVSNLMTELPEETVAILEVVVRKGGFVGIASAYYVIRKLGLVLREGSDRARESAAAALVTMCRQGGSEMVSELAAMAGIERVVWELMGSGTMRGRRKAASLLRILRRWAAGLDGIGMGGDSTTIVSSSRAIVHS 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5823482 5825521 + evm.model.ptg000007l.828 HCH9g0828 551460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0828 679 SUPERFAMILY ARM repeat 377 650 IPR016024 -
HCH9g0828 679 SMART Ubox_2 275 338 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH9g0828 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 353 IPR013083 -
HCH9g0828 679 CDD RING-Ubox_PUB 273 325 IPR045210 -
HCH9g0828 679 Pfam Armadillo/beta-catenin-like repeat 410 444 IPR000225 GO:0005515(InterPro)
HCH9g0828 679 Gene3D - 361 657 IPR011989 -
HCH9g0828 679 Gene3D - 51 142 IPR036537 GO:0007166(InterPro)
HCH9g0828 679 SUPERFAMILY RING/U-box 262 344 - -
HCH9g0828 679 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH9g0828 679 Pfam U-box domain 273 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH9g0828 679 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515(InterPro)
HCH9g0828 679 PANTHER U BOX DOMAIN-CONTAINING 52 654 - -
HCH9g0828 679 Coils Coil 211 231 - -
HCH9g0828 679 FunFam RING-type E3 ubiquitin transferase 272 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0661 HCH-Chr10:5732741 HCH9g0828 HCH-Chr9:5823482 2.30E-39 dispersed
HCH14g0857 HCH-Chr14:36378984 HCH9g0828 HCH-Chr9:5823482 3.50E-33 dispersed
HCH1g1022 HCH-Chr1:58209767 HCH9g0828 HCH-Chr9:5823482 9.60E-61 dispersed
HCH3g0732 HCH-Chr3:5260939 HCH9g0828 HCH-Chr9:5823482 4.80E-95 dispersed
HCH3g1349 HCH-Chr3:51169913 HCH9g0828 HCH-Chr9:5823482 1.40E-43 dispersed
HCH4g0103 HCH-Chr4:549611 HCH9g0828 HCH-Chr9:5823482 8.00E-32 dispersed
HCH5g0206 HCH-Chr5:1164809 HCH9g0828 HCH-Chr9:5823482 2.20E-37 dispersed
HCH5g1327 HCH-Chr5:50340912 HCH9g0828 HCH-Chr9:5823482 1.00E-21 dispersed
HCH8g1357 HCH-Chr8:48392551 HCH9g0828 HCH-Chr9:5823482 9.60E-08 dispersed
HCH9g0828 HCH-Chr9:5823482 HCH9g1187 HCH-Chr9:18222525 3.80E-17 dispersed
HCH9g0828 HCH-Chr9:5823482 HCH3g0327 HCH-Chr3:2070976 1.50E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0828 - - - 0.0