Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0831 ATGTCACAGCTTGGATACGTTGAAACAGACCCGTCTGGTCGTTATGGACGTTTCAGGGAAATTCTAGGCAAAGGAGCCATGAAGACAGTATATAAGGCTTTTGATGAGGTCCTTGGAATAGAGGTAGCTTGGAACCAAGTAAAGCTTAAAGATGTCTTCCATTCACCGGAAGAATTACAGCGCCTCTATTCGGAAGTTCATCTCCTCAAGAATCTCAATCACGATTCCATCATTCGATTCTACACTTCATGGATCGATACTAATCGACGAACCTTCAACTTCATCACTGAAATGTTCACCTCCGGCAGCCTTAGAAATTACAGACTCAAGTACCGGCAAGTCCACATTGGCGCTATCAAGAACTGGGCCCGTCAAATCTTGCACGGTCTGGTTTATCTCCACGCTCACGATCCTCCAGTGATCCACAGAGATCTCAAGTGTGACAACATATTCATTAATGGCCATCTTGGACAAGTTAAGGTTGGTGATTTAGGACTGGCAGCCATCCTCAGTGAATCTCAACATGCCCACAGCGTCATAGGTACACCAGAGTTTATGGCACCAGAGTTATACGAAGAGGAATACGACGAGCTTGTGGACGTTTATTCTTTTGGAATGTGTATGATTGAGATGCTGACTTCAGAGTATCCCTACAGTGAGTGCTCGAATCCGGCTCAAATTTACAAGAAAGTAACTTCAGGAAAGTTACCAAATGCATTCTACCGGATTGAAGATTTGAAAGCCCAGCAATTTGTAAGAAAATGCTTAGAGACCGCCTCGAAGAGGTTGCCCGCTCGGGAGCTCTTGCTCGACCCGTTTCTAGCCTCCAATGCTTATGATGAGGAGTTGTCTTTCCCAGTAACTCCAGCTGTAAGATTGGCTCGTAAAAAATCAGTACCGATGAAAATGCCAACTACAAGGAGGACAGACATGACGATCTCCGGATCAATGGACTCCAAGGATGATACAGTTTACCTAAAAGTGCAGATCAAAGTAAAGGATGGTCGTGCTAAAAACGTCTACTTTATGTTCGACACCGTAAGCGATACTGCAATTGATGTTGCAACTGAGATGGTTAAAGAGCTGGAAATTAGTGACTGGGATCCACTGGAAATTGCTACAATGATCAAGAAGGAGATATCTACTTTAATTCCAAATTGGAAGGAATTACACAAGTATCACCATCAGCACAGCTTCAGCTATTCTGAAGATGACGACGAGGACGACCAAAATGAAACACCCCATCCTTTCTACTCTTGTTCCTCTTATACCTCCTCCCTAAATTCTCTGCAGGCTTTCAACTGTTTGTACGACACCCATCATGGTGGAGGAAATAATATGACCTCTGGCACTGAATGGTTTCAAGATGATCTCCTAATTCATGACAGTGCAAGTTCTAGTAGCTCTCTAAACTCCTTCAATTACTCCGATATAAGCTACTACTCGAGCAACGAAGATGAACACGAATCGCTTCCCAGAGAAGTAGAGCCTTATTGCAACTCAACATCTAATCAACCCACCAGATTTTGCCCCACTATGAACAGAGATACACATCATTTCAGGCTGCGTGATAAGATGAAAGATTGGGAATCAAACTCACAGAGACTTATCAAGATTAAATCAATGGCGGATATCCGAAGCCGGTCGTTGGTCGAGATGATACTTAAGAAAAGATTGTTCAAGACAGTTGGTGCAGTTGAGAATATTGGATTCCAGAACCCATAG 1725 43.36 MSQLGYVETDPSGRYGRFREILGKGAMKTVYKAFDEVLGIEVAWNQVKLKDVFHSPEELQRLYSEVHLLKNLNHDSIIRFYTSWIDTNRRTFNFITEMFTSGSLRNYRLKYRQVHIGAIKNWARQILHGLVYLHAHDPPVIHRDLKCDNIFINGHLGQVKVGDLGLAAILSESQHAHSVIGTPEFMAPELYEEEYDELVDVYSFGMCMIEMLTSEYPYSECSNPAQIYKKVTSGKLPNAFYRIEDLKAQQFVRKCLETASKRLPARELLLDPFLASNAYDEELSFPVTPAVRLARKKSVPMKMPTTRRTDMTISGSMDSKDDTVYLKVQIKVKDGRAKNVYFMFDTVSDTAIDVATEMVKELEISDWDPLEIATMIKKEISTLIPNWKELHKYHHQHSFSYSEDDDEDDQNETPHPFYSCSSYTSSLNSLQAFNCLYDTHHGGGNNMTSGTEWFQDDLLIHDSASSSSSLNSFNYSDISYYSSNEDEHESLPREVEPYCNSTSNQPTRFCPTMNRDTHHFRLRDKMKDWESNSQRLIKIKSMADIRSRSLVEMILKKRLFKTVGAVENIGFQNP 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5873604 5876827 - evm.model.ptg000007l.831 HCH9g0831 551463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0831 574 Pfam Protein kinase domain 20 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0831 574 SUPERFAMILY Protein kinase-like (PK-like) 18 316 IPR011009 -
HCH9g0831 574 ProSiteProfiles Protein kinase domain profile. 16 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0831 574 SMART serkin_6 16 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0831 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0831 574 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
HCH9g0831 574 Gene3D Transferase(Phosphotransferase) domain 1 99 280 - -
HCH9g0831 574 CDD STKc_WNK 14 274 - -
HCH9g0831 574 FunFam probable serine/threonine-protein kinase WNK9 99 279 - -
HCH9g0831 574 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 535 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH9g0831 574 FunFam Probable serine/threonine-protein kinase WNK1 1 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0980 HCH-Chr2:53101309 HCH9g0831 HCH-Chr9:5873604 2.00E-169 dispersed
HCH8g0180 HCH-Chr8:6924322 HCH9g0831 HCH-Chr9:5873604 1.60E-123 dispersed
HCH9g0831 HCH-Chr9:5873604 HCH9g1115 HCH-Chr9:13874943 1.30E-18 dispersed
HCH9g0831 HCH-Chr9:5873604 HCH6g1589 HCH-Chr6:49078327 1.90E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81769 PF00069 Pkinase 1.80E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0831 K08867 - csv:101207665 758.059