Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0840 ATGACTTCTGGTCAGCCCTTGTTGGCTTCACCAGAATCTGTATCAGTTGTTCAGTATCGCTCCCCGTCTCGAAATTTTAGCTCTGTTGGTTGTCTCTGCCGCAGTGCTTCCTTCACTTCTTCCAGTTTTGATGATGTTCAGAGCGATGTTGATGATGTGAAGGAAAATAGCACTAGCTCTGTTGGAGATAATAGCTGGAGTGAGACTTGTCTTATACATTCCGCTTCTCTTCCTAAGAAAAAGCAGTTTTATTCTGTTGGCTCGCGGTTTCCTCAGAAGTCTCCATTTGACTACCCCACGCAGGATAGAAGACGCCTGGTCTCGTGGGGTACAATGGAGCTACATGATATTAATAGCAATTCTATGAGCTTTGAACTCTCTAGGGTACAGGAGAAGTTGAATAAAGCTAATAGAAGCCGTCATAAAAGTGTTCAGTTTGATGATAATTTACAACATGATGATAATCCAAGGTTGATCTATATCAGTGATCCCAAGAGAACTAATGACAAATACGAGTTCACAGGAAATGAGATAACGACCAGCAAGTACACATTGATAACCTTCTTACCGAAGAACCTCTTCATTCAGTTTCACCGTGTTGCATATCTTTACTTTCTTGCTATTGCAGCTCTTAACCAGCTTCCACCTCTGGCAGTCTTTGGGAGAACTGTATCTCTTTTCCCCCTCCTGTTTGTTCTTTGTGTTACAGCTATTAAAGATGGCTATGAGGATTGGCGTAGACACAGATCAGATCGCAATGAGAACAATCGACAGGCTCTAGTGCTTCAATCTGATGAGTTCCGATTAAAAGTATGGAAAAAAATACGAGCAGGAGAAGTTGTAAAGATTCGTGCTGATGAGGCCATTCCTTGTGATATGGTTTTACTGGGGACAAGTGATCCTAGTGGCCTAGCTTACATCCAAACAATGAATTTGGACGGTGAGTCGAACTTGAAGACAAGGTATGCTAGACAGGAGACAGCATCAGCTGTAGCCGAGGGATGCTCGTTTTCTGGTCTTATTCGATGTGAACAACCTAACAGGAATATTTATGAGTTCACTGCCAACATGGAGTTCAACGGACACAAATTTCCCCTCAGTCAGTCAAACATAGTCTTGCGTGGTTGTCAGCTGAAGAACACTGAATGGATCATTGGGGTGGTTGTCTATGCTGGACAAGAAACAAAAGCCATGTTAAACAGTGCAGTGTCACCTTCCAAGCGAAGCAAATTAGAGGGTTACATGAACAGGGAAACATTGTGGTTATCAATCTTCCTCTTTGTCATGTGTCTAGTTGTGGCTCTTGGAATGGGCTTATGGCTCACACATAGCAAGGACCGGCTTGATACCTTGCCATATTATAGGAAAACTTATTTCACTGGGAGGGACTATGGCAAAAAGTACAGGTTTTATGGGATACCTATGGAGACTTTTTTCTCCTTTTTGAGTTCTATTATAGTCTTTCAAATTATGATACCAATATCCCTTTATATTACAATGGAGGTGGTAAGACTGGGTCAGTCGTATTTCATGATTGAAGATAAGCACATGTATTGCAGAATCTCTGGGTCTAGGTTCCAGTGCAGGTCATTGAATATCAATGAGGATCTAGGTCAAGTTCGTTATGTATTTTCAGATAAAACAGGAACCCTCACTGAAAATAAAATGGAATTTAAAAAAGCAAGTGTATATGGGAAGAGTTATGGGAACAACTTACTCGAGGCATATTCATCAATATTGTATTCCGTTCCAGCTCTAGGGAGGAGGTGGAAACTTAAATCTGATGTTGCTGTTGATTCTGAACTTGTCAAATTGTTACACAAGGACTTAACTGGAGATGAAAAGATTGCCGCACATGAATTTTTCCTTACTTTGGCTGCATGCAACACTGTAATTCCTATTCTCACTGATGGCCCATCATCTAGTTATGGAAGTGGTGAATTACAGGAGGATGTAGAAACTATTGATTATCAGGGCGAGTCCCCAGATGAGCAAGCACTAGTCGCTGCAGCCTCTGCTTATGGATACACCCTTTTTGAGCGCACATCTGGGCATATTGTTCTTGATGTCAATGGTGAGAATTTAAGGTTAGATGTTCTGGGCTTGCATGAGTTTGATAGTGTGCGCAAAAGGATGTCTGTTGTTATCAGATTCCCTGACAACACTGTGAAGGTGCTGGTAAAAGGTGCTGATACTTCGATGTTGAGTATTTTAGCCAATGAATCAGAGAGGGAAGAACTTATCAAGCATGCAACTCAAAGCCAGTTATATGAATATTCATTACAAGGTTTGCGGACCCTTGTAGTTGCTGCTAGGGACCTTACAGATTCTGAATTTGAGCTATGGCAAAGCAGATATGAAGATGCAAGCACTTCACTGACTGATAGAGCAATAAAACTACGTCAGACAGCTGCTCTCATAGAGAGTGACCTAAAGCTTCTTGGTGCAACTGCTATTGAGGACAAGTTACAGGATGGTGTGCCTGAAGCCATTGAATCTCTTCGGCAGGCAGGAATAAAAGTTTGGATTCTGACTGGGGATAAGCAGGAGACAGCTATATCAATTGGCCTCTCTTGCAAATTGCTGACGTCAGATATGCAGTTGATTATTATTAATGGAAACTCTGAGGATGATTGCAGACAACTTTTAGCTGATGCTAAAGCAAAATATGGTGTGAAATCAACGCATTGCAGAAATCAGAATTCAAAGCTGAAGAAATGTGAGAATGATTGTCATGACATACGAAGACTTTCAAAGCCACCTGGTTGGGATGAGGAGGGGGAGGAGGGAATGCCGAATAAACCTCTAGCTCTAATAATAGATGGAAATAGCTTAGTGTACATTTTGGAGAAGGATCTGGAGTCAGAGCTTTTTGACCTTGCAACTTCATGCAATGTTGTGCTATGCTGTCGTGTTGCACCCTTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTCGGACTGATGATATGACATTGGCAATAGGAGATGGGGCCAATGATGTGTCAATGATTCAGATGGCCGATGTAGGTGTTGGTATATGTGGACAGGAAGGGCGTCAAGCAGTAATGGCATCTGATTTTGCTATGGGACAATTTCGCTTTATAAAAAGATTACTTTTAGTGCATGGACACTGGAACTATCAACGTGTTGGCTACATGGTTCTTTACAACTTCTACCGAAACGCTGTTTTTGTCTTGATGCTCTTCTGGTTCATACTATTCACAGCATTCTCAACAACTTCAGCTTTGACCGATTGGAGTAGTGTGTTTTATTCTGTTATTTATACGTCTATCCCTACTATTTTTGTTGGTATTCTGGACAAAGACTTAAGTCACAAGACATTACTAAAATATCCAAAGCTCTATTGTACCGGCCATAGACACGAGGCATACAATATGCGTCTCTTTTGGTTCACAATGGTTGACACACTCTGGCAGAGTCTTGTTCTCTTCTATGTACCATTTTTCACTTATAGTGAGAGCACCATTGATATATGGAGCATGGGGAGTTTGTGGACCATAGCGGTTGTTATTCTTGTGAATGTGCACTTGGCAATGGATGTTCATCGTTGGGTATTTATTACCCATGCTGCAGTTTGGGGATCCATCATCATAACATATGCCTGCATGGTCGTGTTGGATTCAATTCCCATTTTTCCTAATTACTGGACGATTTTCAATCTGGCTAGGTCCCCTACCTATTGGCTGACTATATTGCTTATAATAGTTGTAGCATTGCTTCCACGTTATCTCTTCAAAGTTGTGCACCAAAGATTTTGGCCTTCAGATATTCAAATAGCGAGAGAAGCCGAAGTACTGAGAAAAGGTCACGGCGATTATTTGGGTTCAAAGCGAGATCAAGATTCCAATTAA 3876 41.41 MTSGQPLLASPESVSVVQYRSPSRNFSSVGCLCRSASFTSSSFDDVQSDVDDVKENSTSSVGDNSWSETCLIHSASLPKKKQFYSVGSRFPQKSPFDYPTQDRRRLVSWGTMELHDINSNSMSFELSRVQEKLNKANRSRHKSVQFDDNLQHDDNPRLIYISDPKRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVLQSDEFRLKVWKKIRAGEVVKIRADEAIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSFSGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAVSPSKRSKLEGYMNRETLWLSIFLFVMCLVVALGMGLWLTHSKDRLDTLPYYRKTYFTGRDYGKKYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEVVRLGQSYFMIEDKHMYCRISGSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKKASVYGKSYGNNLLEAYSSILYSVPALGRRWKLKSDVAVDSELVKLLHKDLTGDEKIAAHEFFLTLAACNTVIPILTDGPSSSYGSGELQEDVETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVLDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTVKVLVKGADTSMLSILANESEREELIKHATQSQLYEYSLQGLRTLVVAARDLTDSEFELWQSRYEDASTSLTDRAIKLRQTAALIESDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQLIIINGNSEDDCRQLLADAKAKYGVKSTHCRNQNSKLKKCENDCHDIRRLSKPPGWDEEGEEGMPNKPLALIIDGNSLVYILEKDLESELFDLATSCNVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFIKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWFILFTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSHKTLLKYPKLYCTGHRHEAYNMRLFWFTMVDTLWQSLVLFYVPFFTYSESTIDIWSMGSLWTIAVVILVNVHLAMDVHRWVFITHAAVWGSIIITYACMVVLDSIPIFPNYWTIFNLARSPTYWLTILLIIVVALLPRYLFKVVHQRFWPSDIQIAREAEVLRKGHGDYLGSKRDQDSN 1291
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 5944635 5950139 - evm.model.ptg000007l.840 HCH9g0840 551472
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0840 1291 Gene3D - 522 540 - -
HCH9g0840 1291 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 149 1270 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
HCH9g0840 1291 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 550 827 IPR023299 GO:0000166(InterPro)
HCH9g0840 1291 Gene3D - 811 1035 IPR023214 -
HCH9g0840 1291 CDD P-type_ATPase_APLT_Dnf-like 175 1155 - -
HCH9g0840 1291 SFLD C1.7: P-type atpase like 528 1046 - -
HCH9g0840 1291 SUPERFAMILY Calcium ATPase, transmembrane domain M 173 1262 IPR023298 -
HCH9g0840 1291 Gene3D - 235 401 - -
HCH9g0840 1291 Gene3D - 656 796 IPR023299 GO:0000166(InterPro)
HCH9g0840 1291 NCBIfam phospholipid-translocating P-type ATPase 173 1270 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
HCH9g0840 1291 SUPERFAMILY Calcium ATPase, transduction domain A 256 397 IPR008250 -
HCH9g0840 1291 Gene3D - 554 568 IPR023299 GO:0000166(InterPro)
HCH9g0840 1291 Pfam Phospholipid-translocating ATPase N-terminal 159 224 IPR032631 -
HCH9g0840 1291 NCBIfam HAD-IC family P-type ATPase 965 1081 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH9g0840 1291 NCBIfam HAD-IC family P-type ATPase 806 862 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH9g0840 1291 NCBIfam HAD-IC family P-type ATPase 477 573 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH9g0840 1291 FunFam Phospholipid-transporting ATPase 810 1035 - -
HCH9g0840 1291 Pfam haloacid dehalogenase-like hydrolase 791 855 - -
HCH9g0840 1291 ProSitePatterns E1-E2 ATPases phosphorylation site. 546 552 IPR018303 -
HCH9g0840 1291 SUPERFAMILY HAD-like 539 1041 IPR036412 -
HCH9g0840 1291 Pfam Phospholipid-translocating P-type ATPase C-terminal 1023 1263 IPR032630 -
HCH9g0840 1291 SFLD p-type atpase 528 1046 IPR044492 -
HCH9g0840 1291 Gene3D - 541 553 IPR023214 -
HCH9g0840 1291 Pfam E1-E2 ATPase 256 501 - -
HCH9g0840 1291 Pfam Cation transport ATPase (P-type) 659 736 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0149 HCH-Chr3:953368 HCH9g0840 HCH-Chr9:5944635 1.90E-189 dispersed
HCH4g1491 HCH-Chr4:11291545 HCH9g0840 HCH-Chr9:5944635 2.30E-190 dispersed
HCH9g0840 HCH-Chr9:5944635 HCH9g1360 HCH-Chr9:45094899 3.70E-13 dispersed
HCH13g0299 HCH-Chr13:1991655 HCH9g0840 HCH-Chr9:5944635 0.00E+00 transposed
HCH7g0131 HCH-Chr7:879768 HCH9g0840 HCH-Chr9:5944635 2.40E-162 transposed
HCH1g0823 HCH-Chr1:56880617 HCH9g0840 HCH-Chr9:5944635 1.10E-189 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0840 K14802 - csv:101206692 2195.24