Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0843 ATGAAGGAAATTCATAAATACCACTATATTGGGGTTTTCTCTGTTTTCATTTTCTTGGTTTTTGGAGTTAATGTGATTTTAGGAGATGATTATGTACCTCGTGATTTTATACTCTTGAATTGTGGAGGGCCTCCGACCGCTACCGATATCGATAATCGGAAATGGATGACTGATAACAATTCTAAATTTGCTTCTGCATCTGGGAAAAGCCTTACATCACCAGCTGCTACTCAAGGCCCTTCTGTTCCTGATGTCCCATTTATGACAGCCAGGGTTTTTCATTCGAATTTCACTTATAGTTTTCCTGTGGCGATTGGTCGGTTGTTCGTTCGGTTGTATTTTTACCCTTCTTCATATGGAGGTTTGAATGCATCTGATGCTATATTCTCAGTTACGGCTCAATCGTATACTCTTGTTAAGAACTTCAGCTCTGAGCAGACTACTGATGCTTTGAATTTAGCTTATATTATTAAGGAGTATTCAGTTCATGTTGAAGATGGGAGATTGAATCTCACTTTCATTCCATCCTCTAGTTATCCTAATGCTTATGCATTTGTGAATGGGATTGAGATTGTATCGATGCCGGATATTTATAGTGAAACTTCTGGCACTGCAATATTGGTTGGTCAAACTAATTCATTCATTGTGGATAATAGCTCTGCACTTGAGAATGTTTATCGGTTAAATGTTGGGGGGAATTATATCTCGCCTTCTGATGATACAGGTATGTATAGGTCTTGGTATGATGACTCGCCGTATTTGTATGGTGCATCGTTGGGAGTAACAATGAGCACTGATCCGAACACGACAATTAAATATCCTCGAGAGATTCCCACTTATGTTGCACCAGTCAATGTCTACTCCACTGCTAGAGCAATGGGACCGGATAACTATGTCAATCTGAACTATAATATGACCTGGTTTTTTACTGTTGATTCTGGGTTCTTTTACCTTGTTAGGCTCCATTTCTGCGAGGTTGCTGCAAACATCACAAAAGTTAATCAAAGAGTGTTTGATATATACCTCTATAATCGAACTGCCATGAGTGCTGCTGATGTTGTTGCCTGGGCTGGTGGAAATGATAATAATAACGTTCCCGTGGTCAAGGATTATGTGGTTTTTGTTCCAAGTGGGAGTCCACAACTGGATCTATGGCTTGAACTGCATCCAACAAAGTCTATGATTCCAAATTACTATAATGCGATCTTGAACGGAGTGGAGATATTCAAAATTAACGATACAAGTGGTAATCTTGGAGGGTCGAATCCTATTCCTGCTCCTCAACAGGATAATGTCGACCCATCATTGGTTAGGCCAGCGTCTTCTCATGGTAAATCGAAGAACCATACTGCAATTATTGCTGGAGGTGTTTGTGGTGGAATTGTTTTACTCTTGACCATTGGTTTCTTTGTTATTGCTAACCATCGCCGTAGGCACGGGAAAGATTCGAGTACTTTTGAAGGACCATCAGGACCATCAGGATGGCTCCCACTTTCTCTCTATGGAAATTCACATTCAGCAGGCTCTGCTAAGACAAACACAACTGGAAGCTATACATCCTCCCTGCCTTCCAACCTTTGCCGCCACTTCTCATTTTCTGAAATCAAGGCTGCCACAAAGGACTTTGATGAATCTCGACTACTTGGAGTGGGTGGTTTTGGCAAGGTTTACAAGGGAGAGATTGATGGTGGGACCACCAAAGTTGCAATCAAGCGTGGGAACCCTCTCTCTGAGCAAGGTGTGCATGAATTCCAAACTGAGATTGAAATGCTTTCTAAGCTTCGCCATCGCCACCTTGTATCATTGATTGGCTATTGCGAAGAGAACTGTGAAATGATCCTTGTTTATGATTACATGGCGCATGGAACGCTGCGTGAGCATCTATACAAGACCCAAAAGCCTCCACTATCTTGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCCCGTGGTCTGCATTATCTCCACACTGGTGCCAAGCATACTATTATTCACCGAGATGTTAAGACAACCAACATTCTTTTGGATGAAAAGTGGGTGGCGAAAGTATCTGATTTTGGGTTGTCGAAAACTGGTCCTACATTGGATCACACACACGTAAGCACTGTGGTGAAAGGTAGTTTTGGGTACTTGGATCCTGAATATTTCAGGCGGCAGCAACTTACTGACAAATCTGATGTTTATTCATTTGGAGTTGTTCTCTTTGAGGTCCTTTGTGCTCGGCCAGCTCTGAACCCAGCACTCTCCAGAGAGCAAGTGAGTTTAGCGGAGTGGGCTGCTCACTGCTACAACAAAGGCATTTTGGATCAGATAATCGACAATTTCCTAAAGGCGAAAATCGCACCCGAGTGTCTCAAGAAGTTTGCTGAGACAGCAATGAAGTGTGTATCTGATCAGGGCATCGACCGGCCATCAATGGGTGATGTGCTGTGGAATTTAGAATTCGCATTGCAGCTGCAGGAGAGTGCAGAAGAGAGTGGCAAACTCGGTGGCGAAATGGAAGTGGAAGACGGTCAACTTGATGATGTATTCTATAAAGGGAAGAAGGATCCAAATGCATCTCCCAGCTTGGATGGAAATATAACAGACTCGAGGAGCACTGGAATCAGTATGAGCATCGGAAGTCGAAGCCTCGCAAGTGAAGACTCTGATGGATTGACACCCAGTGCTGTATTCTCGCAGATCATGAACCCGAAAGGTCGTTGA 2706 43.02 MKEIHKYHYIGVFSVFIFLVFGVNVILGDDYVPRDFILLNCGGPPTATDIDNRKWMTDNNSKFASASGKSLTSPAATQGPSVPDVPFMTARVFHSNFTYSFPVAIGRLFVRLYFYPSSYGGLNASDAIFSVTAQSYTLVKNFSSEQTTDALNLAYIIKEYSVHVEDGRLNLTFIPSSSYPNAYAFVNGIEIVSMPDIYSETSGTAILVGQTNSFIVDNSSALENVYRLNVGGNYISPSDDTGMYRSWYDDSPYLYGASLGVTMSTDPNTTIKYPREIPTYVAPVNVYSTARAMGPDNYVNLNYNMTWFFTVDSGFFYLVRLHFCEVAANITKVNQRVFDIYLYNRTAMSAADVVAWAGGNDNNNVPVVKDYVVFVPSGSPQLDLWLELHPTKSMIPNYYNAILNGVEIFKINDTSGNLGGSNPIPAPQQDNVDPSLVRPASSHGKSKNHTAIIAGGVCGGIVLLLTIGFFVIANHRRRHGKDSSTFEGPSGPSGWLPLSLYGNSHSAGSAKTNTTGSYTSSLPSNLCRHFSFSEIKAATKDFDESRLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTQKPPLSWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPALSREQVSLAEWAAHCYNKGILDQIIDNFLKAKIAPECLKKFAETAMKCVSDQGIDRPSMGDVLWNLEFALQLQESAEESGKLGGEMEVEDGQLDDVFYKGKKDPNASPSLDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5967702 5970407 + evm.model.ptg000007l.843 HCH9g0843 551475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0843 901 Gene3D Phosphorylase Kinase; domain 1 527 618 - -
HCH9g0843 901 MobiDBLite consensus disorder prediction 419 446 - -
HCH9g0843 901 ProSitePatterns Protein kinases ATP-binding region signature. 548 571 IPR017441 GO:0005524(InterPro)
HCH9g0843 901 Gene3D Transferase(Phosphotransferase) domain 1 619 834 - -
HCH9g0843 901 Gene3D - 221 412 - -
HCH9g0843 901 Gene3D - 36 194 - -
HCH9g0843 901 Pfam Protein tyrosine and serine/threonine kinase 546 810 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0843 901 Pfam Malectin-like domain 39 411 IPR024788 -
HCH9g0843 901 FunFam Receptor-like protein kinase FERONIA 619 829 - -
HCH9g0843 901 ProSiteProfiles Protein kinase domain profile. 542 816 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0843 901 PANTHER OS03G0124300 PROTEIN-RELATED 15 477 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
HCH9g0843 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0843 901 FunFam Receptor-like protein kinase FERONIA 514 618 - -
HCH9g0843 901 MobiDBLite consensus disorder prediction 844 901 - -
HCH9g0843 901 SMART serkin_6 542 816 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0843 901 SUPERFAMILY Protein kinase-like (PK-like) 515 815 IPR011009 -
HCH9g0843 901 FunFam FERONIA receptor-like kinase 220 412 - -
HCH9g0843 901 CDD STKc_IRAK 548 814 - -
HCH9g0843 901 FunFam FERONIA receptor-like kinase 36 195 - -
HCH9g0843 901 MobiDBLite consensus disorder prediction 855 894 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1363 HCH-Chr4:9721657 HCH9g0843 HCH-Chr9:5967702 1.90E-162 dispersed
HCH8g1279 HCH-Chr8:47967930 HCH9g0843 HCH-Chr9:5967702 7.20E-170 dispersed
HCH9g0316 HCH-Chr9:1961857 HCH9g0843 HCH-Chr9:5967702 3.80E-203 dispersed
HCH9g0317 HCH-Chr9:1965824 HCH9g0843 HCH-Chr9:5967702 6.00E-204 dispersed
HCH9g0319 HCH-Chr9:1972156 HCH9g0843 HCH-Chr9:5967702 1.30E-89 dispersed
HCH9g0843 HCH-Chr9:5967702 HCH5g0317 HCH-Chr5:2068509 2.70E-63 dispersed
HCH9g0843 HCH-Chr9:5967702 HCH9g0850 HCH-Chr9:6038184 1.70E-65 proximal
HCH10g0718 HCH-Chr10:6677720 HCH9g0843 HCH-Chr9:5967702 3.20E-247 transposed
HCH14g0683 HCH-Chr14:35332141 HCH9g0843 HCH-Chr9:5967702 1.20E-62 transposed
HCH1g0366 HCH-Chr1:50860813 HCH9g0843 HCH-Chr9:5967702 7.40E-60 transposed
HCH14g1131 HCH-Chr14:38199611 HCH9g0843 HCH-Chr9:5967702 1.40E-173 transposed
HCH1g0825 HCH-Chr1:56890772 HCH9g0843 HCH-Chr9:5967702 1.10E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81772 PF12819 Malectin_like 3.50E-37 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0843 - - - 0.0