Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0846 ATGAGGCCACAATCTTTTTTTGCAACAGTTCCTGTACTCTTACTCATACTTTTCCTGCCACGCATTCCGGCCGACCTGAATTCAGACAAGCAAGCTCTTCTTGATTTTATTAATAAGGTTCCCCATGGTCGAAAAATCAACTGGGATCCGGCTACCTTGGTCTGCACTACTTGGGTTGGTATCACTTGTACTTCAGATCTCTCACATGTGCTTGCTGTCCGGCTCCCTGCTGTTGGACTGTATGGTCCAATTCCCATCAATACACTTGGAAAGCTGGATGCCCTCAAAATCTTGAGTCTCCGGTCTAATAATCTTAATGGAGACCTTCCATTAGATGTACTGTCCCTTTCATCACTAAAGTATATATATCTTCAGCATAATAACTTCTCTGGTAAAATTCCTTCTTCCCTGTCTCCTCGTCTTACCTTCCTCGATCTGTCTTTCAACTCTCTCACCGGAAACATTCCAGCATCAATACGGAATTTAACACATCTCACTAACCTCGACCTTCAAAACAACTTGCTGACCGGACCCATTCCTGATTTAGATCCCTCACTTAAGCAATTGAACTTGAGCTTCAACCATCTAAGTGGTCCAATTCCTTCTTCATTGCAATCATTTCCTCCTTCTTCGTTTGAAGGGAACTTGATGCTATGTGGGTCACCTCTGAAAAGTTGCTCTCTAGGTGCAGCCCCACCTTCCACCTCTCCTCCTCCACCAATCCCTGCAAAGAAAAAGAGTGGAAAGAAAATAAATATTGGAGCCATTGTTGCTATTGCATTAGGTGGTTTTGCAGTGCTTTTTCTACTGGTGTTGATGATTGTGATCTGCTGTATGAAGAAAAAAGATAGTGAAGGTGCAGTGAAAGGAAAGGGTAAAAGGACTGAACAACCAAAGGAGGATTTTGGAAGTGGAGTGCAAGAGCCAGAGAAAAATAGGCTGGTTTTCTTTGAAGGCTGCTCTTATAATTTTGATCTTGAGGACTTGTTAAGAGCCTCGGCCGAAGTGCTCGGAAAAGGAAGTTATGGAACTACTTACAAGGCAATCTTGGAGGAGGGAAAAACAGTGGTTGTAAAGAGATTGAAAGAAGTGGCAGCTGGAAAAAAAGAGTTCGACCAACAAATGGAGGTTGTGGGAAGGATGGGCCAGCATCCAAATGTCGTGCCTCTCCGTGCTTATTACTATTCGAAGGATGAGAAACTTTTGGTTTACGATTATGCCGAGGCCGGAAGCTTTTCAGCCTTACTGCGCGGAAATAGGGAAGGCGGACGAGCACCGCCAGACTGGGACACCAGAGTGAAGATTTCACTGGGATGTGCTAGAGGCCTTGCACATATCCATTCAGCTAGTGGCGGGAAATTTATCCACGGCAACATAAAAGCCTCCAACATCCTTCTTACACAAGACCTGAACGGATGTATCTCAGATTTTGGCCTGACTTCTCTGATGAACTCCCCTGCTGTTCCCTCAAGAAGTTCAGGTTATCGAGCTCCGGAGGTGATTGAAACTAGAAAGTCGACACAAAAGTCTGATGTTTACAGTTTTGGAGTTGTTTTGCTCGAGATGTTGACTGGGAAAGCACCATCCCAATCACCAGGCCGTGATGATGTAATCGACCTTCCAAGGTGGGTGCAATCCGTCGTTAGGGAGGAATGGACATCTGAGGTGTTTGATGTAGAGCTAATGAAATATCAGAACATTGAAGAAGAGCTGGTTCAAATGCTTCAAATAGCAATGGCCTGTGTGTCTAGGATGCCCGATATGAGACCCGCAATGGAGGAAGTTGTGAAAATGATCGAGGAAATCCGAACGCCTGACTCCGATGCTCGACCATCATCAGAGGAAAACAAGTCAAATGACAAGGACAATGACTCTAATCCTCAGAACTTATAA 1893 44.64 MRPQSFFATVPVLLLILFLPRIPADLNSDKQALLDFINKVPHGRKINWDPATLVCTTWVGITCTSDLSHVLAVRLPAVGLYGPIPINTLGKLDALKILSLRSNNLNGDLPLDVLSLSSLKYIYLQHNNFSGKIPSSLSPRLTFLDLSFNSLTGNIPASIRNLTHLTNLDLQNNLLTGPIPDLDPSLKQLNLSFNHLSGPIPSSLQSFPPSSFEGNLMLCGSPLKSCSLGAAPPSTSPPPPIPAKKKSGKKINIGAIVAIALGGFAVLFLLVLMIVICCMKKKDSEGAVKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGKTVVVKRLKEVAAGKKEFDQQMEVVGRMGQHPNVVPLRAYYYSKDEKLLVYDYAEAGSFSALLRGNREGGRAPPDWDTRVKISLGCARGLAHIHSASGGKFIHGNIKASNILLTQDLNGCISDFGLTSLMNSPAVPSRSSGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPSQSPGRDDVIDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRMPDMRPAMEEVVKMIEEIRTPDSDARPSSEENKSNDKDNDSNPQNL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5984425 5986701 - evm.model.ptg000007l.846 HCH9g0846 551478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0846 630 ProSiteProfiles Protein kinase domain profile. 331 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0846 630 MobiDBLite consensus disorder prediction 600 622 - -
HCH9g0846 630 MobiDBLite consensus disorder prediction 287 306 - -
HCH9g0846 630 SUPERFAMILY L domain-like 39 207 - -
HCH9g0846 630 PANTHER OS05G0588300 PROTEIN 11 616 IPR050994 -
HCH9g0846 630 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 407 613 - -
HCH9g0846 630 Gene3D Ribonuclease Inhibitor 183 227 IPR032675 -
HCH9g0846 630 Gene3D Phosphorylase Kinase; domain 1 299 406 - -
HCH9g0846 630 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
HCH9g0846 630 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515(InterPro)
HCH9g0846 630 CDD STKc_IRAK 337 602 - -
HCH9g0846 630 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
HCH9g0846 630 MobiDBLite consensus disorder prediction 600 630 - -
HCH9g0846 630 Pfam Protein kinase domain 335 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0846 630 FunFam Probable inactive receptor kinase RLK902 26 183 - -
HCH9g0846 630 Pfam Leucine Rich Repeat 164 181 IPR001611 GO:0005515(InterPro)
HCH9g0846 630 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
HCH9g0846 630 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
HCH9g0846 630 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
HCH9g0846 630 Gene3D Transferase(Phosphotransferase) domain 1 408 627 - -
HCH9g0846 630 SUPERFAMILY Protein kinase-like (PK-like) 335 600 IPR011009 -
HCH9g0846 630 ProSitePatterns Protein kinases ATP-binding region signature. 337 368 IPR017441 GO:0005524(InterPro)
HCH9g0846 630 FunFam pollen receptor-like kinase 1 299 406 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1282 HCH-Chr11:44872426 HCH9g0846 HCH-Chr9:5984425 4.20E-119 dispersed
HCH2g0970 HCH-Chr2:53026899 HCH9g0846 HCH-Chr9:5984425 4.60E-179 dispersed
HCH5g0854 HCH-Chr5:6927688 HCH9g0846 HCH-Chr9:5984425 9.10E-122 dispersed
HCH8g0788 HCH-Chr8:44481990 HCH9g0846 HCH-Chr9:5984425 4.40E-132 dispersed
HCH8g1095 HCH-Chr8:46758794 HCH9g0846 HCH-Chr9:5984425 1.80E-64 dispersed
HCH9g0433 HCH-Chr9:2730744 HCH9g0846 HCH-Chr9:5984425 1.20E-100 dispersed
HCH9g0846 HCH-Chr9:5984425 HCH13g1275 HCH-Chr13:40656402 7.30E-47 dispersed
HCH9g1129 HCH-Chr9:14515102 HCH9g0846 HCH-Chr9:5984425 5.60E-50 dispersed
HCH1g0837 HCH-Chr1:56965396 HCH9g0846 HCH-Chr9:5984425 1.60E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81773 PF00069 Pkinase 1.60E-39 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0846 - - - 0.0